Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1176 ATGCCTGCTTTGACTTCCAATGAATCAACTCAGTCTGGGTTTGAGCCTTCGAACCCTTATGGTTCTAGGCAACAAGCCCGGGGTGGTCTGAGTAATGGCCGTTATGGTGGTCGTGGTCCACGCCGGAGTTTTGTTCGCCGGGAAGAAACTCATGAGTCGAATGCTTACCTGAATCGCGACGGTTTTGATATTTCTGACAAGTTTGACAACCTGGAGATTGTCGAGGAAGATACGACTGCTGGTGCGATCAATTTTGATGCATACGAAGATATCCCAGTGGAGGCCAGTGGCTCAGAAATACCCTCACCTGTCCATACCTTCGCAGAAATTGAGTTAAACGAGGGTTTAAACAAGAATATCAAGAGATGCAAGTACGTCAAACCCACTCCGATTCAGCGTCACGCAATACCCATTGCCATGGCAGGCCGTGACTTGATGGCCTGTGCGCAGACCGGGTCAGGGAAGACCGCTGCGTTCTGTTTCCCCATTATATCTGGGGTTTTGAAGGATCGTTCAGGGTTTTCGGCTACGTCTCGGGCAGGCAGGATAGCATATCCCGCTGCGCTTATCGTGTCTCCAACTAGGGAGTTGTCATGCCAGATTCATGATGAAGCCAAGAAGTTTGCTTACCAGACCGGATTGAAGATTGTTGCTGCTTATGGTGGGGCATCGATTGCTCAGCAGTTTCGCGTTTTGGAAAAAGGGGTGGACATCTTAGTTGCAACCCCGGGGCGCTTGGTGGATATGATTGAGAGAGGAAGGGTTTCACTAACAAGAATAAAATTTCTTGCTCTTGATGAAGCGGATCGTATGTTGGACATGGGCTTTGAGCCTCAAATTCGCAAGATAGTTGAGCGCATGGATATGCCTCCACCTGGTGCTAGACAGACTATGCTCTTCAGTGCTACATTCCCAGATGATATCCAGAAGCTTGCATCTGACTTTCTTTCAAACTATATCTTCCTATCCATCGGAAGAGTTGGTTCCAGCACTGAACTGATTGTACAGAAAGTTGAACTTGTTCAGGATATGGATAAAAGGAACCATCTTGTGGATCTTCTCCGTTCTCGAAGGTTAAATCGGGCCAATGGAAAGCAAGCATTGACTTTAATTTTTGTTGAAACAAAAAGAGGAGCGGATGCTTTAGAAAACTGGCTGTCGAGAAAAGGTTTTCCAGCGATTGCGATACATGGTGACAAAGTTCAAATGGAGAGGGAAAGAGCCTTGAGATCTTTCAAAAGTCGTGCTACTCCTATTCTGGTTGCTACTGATGTTGCTTCACGAGGCTTGGACATACCGCATGTAGCTCATGTTGTCAATTTTGACCTGCCAAAAGATATAGATGGCTATGTTCACAGGATTGGCCGAACCGGTCGAGCTGGCAAGTCTGGTTTGGCCACTGCATTCTTCAGCGAAAAGAACATCCCTCTTGCAAAGGCCCTCGCTGGACTCATGACAGAAGCAAAACAGGAGGTTCCCTCTTGGCTCGCCCAGTATGCAGAGAGATCACCATATAGTACTCGTAGGCCTAGAAGGGGCCAGAGGTATGGTAGTGGCGAGTACCGTGACTTCAGAAACGTGACTGAGGTGGAGAATTACAGCAACTTCAGTACTTATGGGAATTCAGATTATGCAGAGAACTCTTGCATTGATACTACCTCTTTTGACATCTCATTCCCTTATAATGATTCCTCTTATGATATGGCAAACACAGTTCTCGCTGCTGCTGCCAATTTCCATTACAGTGATGCTGACTCTGGTTTTTATGGAGGAGGAAAGCCTGCGGATGGACCAAACGGGTATGTATCTGTTTTGGCCACTGGTTGGGACTAG 1833 0.4714 MPALTSNESTQSGFEPSNPYGSRQQARGGLSNGRYGGRGPRRSFVRREETHESNAYLNRDGFDISDKFDNLEIVEEDTTAGAINFDAYEDIPVEASGSEIPSPVHTFAEIELNEGLNKNIKRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIISGVLKDRSGFSATSRAGRIAYPAALIVSPTRELSCQIHDEAKKFAYQTGLKIVAAYGGASIAQQFRVLEKGVDILVATPGRLVDMIERGRVSLTRIKFLALDEADRMLDMGFEPQIRKIVERMDMPPPGARQTMLFSATFPDDIQKLASDFLSNYIFLSIGRVGSSTELIVQKVELVQDMDKRNHLVDLLRSRRLNRANGKQALTLIFVETKRGADALENWLSRKGFPAIAIHGDKVQMERERALRSFKSRATPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSEKNIPLAKALAGLMTEAKQEVPSWLAQYAERSPYSTRRPRRGQRYGSGEYRDFRNVTEVENYSNFSTYGNSDYAENSCIDTTSFDISFPYNDSSYDMANTVLAAAANFHYSDADSGFYGGGKPADGPNGYVSVLATGWD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1176 610 CDD SF2_C_DEAD 334 470 - -
Dere03g1176 610 FunFam Probable ATP-dependent RNA helicase DDX4 67 324 - -
Dere03g1176 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 322 IPR014001 -
Dere03g1176 610 MobiDBLite consensus disorder prediction 1 52 - -
Dere03g1176 610 SMART ultradead3 124 337 IPR014001 -
Dere03g1176 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 500 - -
Dere03g1176 610 MobiDBLite consensus disorder prediction 1 29 - -
Dere03g1176 610 Gene3D - 324 504 IPR027417 -
Dere03g1176 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Dere03g1176 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 478 IPR027417 -
Dere03g1176 610 Pfam Helicase conserved C-terminal domain 345 461 IPR001650 -
Dere03g1176 610 Gene3D - 64 323 IPR027417 -
Dere03g1176 610 SMART helicmild6 380 461 IPR001650 -
Dere03g1176 610 FunFam ATP-dependent RNA helicase RhlB 325 503 - -
Dere03g1176 610 Pfam DEAD/DEAH box helicase 129 311 IPR011545 GO:0003676|GO:0005524
Dere03g1176 610 CDD DEADc_DDX3_DDX4 106 328 IPR044763 GO:0003724|GO:0005524
Dere03g1176 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 500 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1176 Dere-ChrDere03 18877667 18880969 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1176 103 497 Eukaryotic Initiation Factors Gene Family AT3G19760 32.071 1.12e-60 206