Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1173 ATGGCTTTGTCTAATGGTGGAGGCACCTACTTGGACCAGAAGCCTTTTCGCTCGTCTCGCCGCATCTACGTACCTGCTGACTGCAGGAACAATGGCATGCCTACTTTGACTTCCAATGAATCAACTCAGTCTGGGTTTGCGCCTTCGAACCCTTATGGTTATAGACAACAAACCCGGGGTGGTCTGAGTAATGGCCGTTATGGTGGTCGTGGTCGACGCCGGAGTTTTGTTCGCCGGGAAGAAACTCATGAGTCGAATGCCTACCTGAATCGCGACGGTTTTTATATTTCTGACAAGTTTGACAACCTAGAGATTGTCGAGGAAGATACGACTGCTGGTGCGACCAATTTTGATGCATACGAAGATATCCCAGTGGAGGCCAGTGGCTCAGAAATACCCCCACCTGTCCATACCTTCGCAGAAATGGAGTTAAACAAGGGTTTAAACAAGAATATCAAGAGATGCAAGTACGTCAAACCCACTCCGATTCAGCGTCACGCAATACCCATTGCCATGGCGGGCCGTGACTTGATGGCCTGTGCGCATACTGGGTCAGGGAAGACCGCTGCGTTCTGTTTCCCTATTATATCTGGGGTTTTGAAGGATCGTTCGGGGTTTTTGGCTATGTCTCGGGGAGGCAGGATTGCATATCCCGCTGCGCTTATCATGTCTCCAACTAGGGAGCTGTCATGTCAGATTCATGATGAAGCCAAGAAGTTTGCTTACCAGATCGGATTGAAGATTGTTGCTGCTTATGGTGGGGCATCGATTGCTCAGCAGTTTCGCGTTTTGGAAAAAGGGGTGGACATCTTAGTTGCAACCCCTGGGCGCTTGGTGGATATGATTGAGAGAGGAAGGGTTTCACTAACAAGAATAAAATTTCTTGCTCTTGATGAAGCGGATCGTATGTTGGACATGGGCTTTGAGCCCCAAATTCGCAAGATAGTTGAGCGCATGGATATGCCTCCATCTGGTGCTAGACAGACTATGCTCTTCAGTGCTACATTCCCAGATGATATCCAGAAGCTTGCATCTGACTTTCTTTCAAACTATATCTTCCTATCCATTGGAAGAGTTGGTTCCAGCACTGAACTGATTGTACAGAAAGTTGAACTTGTTCAGGATAGGGATAAAAGGAACCATCTTGTGGATCTTCTCCGTTCTCAAAGGTTAAATGGGGCCAATGGAAAGCAAGCATTGACTTTAATTTTTGTTGAAACAAAAAGAGGAGCGGATGCTTTAGAAAACTGGCTGTCGAGAAAAGGTTTTCCAGCGATTGCGATACATGGTGACAAAGTTCAAATGGAGAGGGAAAGAGCCTTGAGATCTTTTAAAAGTCGTGCTACTCCTATTCTGGTTGCTACTGATGTTGCTTCACGAGGCTTGGACATACCGCATGTAGCTCATGTTGTCAATTTTGACCTGCCAAAAGATATAGATGGCTATGTTCACAGGATTGGCCGAACCGGTCGAGCTGGCAAGTCTGGTTTGGCCACTGCATTCTTCAGCGAAAAGAACATCCCTCTTGCAAAGGCCCTTGCTGGACTCATGACAGAAGCAAAACAGGAGGTTCCCTCTTGGCTCGCCCAGTATGCAGAGAGATCACCATATAGTACTCGTAGCCCTAGAAGGGGCCAGAGGTATGGTAGTGGCGAGTACCGTGACTTCAGAAACGTGACTGAGGTGGAGAATTACAGCAACTTCAGTACTTATGGGAATTCAGATTATGCAGAGAACTCTTGCATTGATACTACCTCTTTTGACATCTCATTCCCTTATAATGATTCCTCTTATGATATGGCAAACACAGTTCCCGCTGCTGCTACCAATTTCCATTACAGTGATGCTAACTCTGGTTTTCATGGAGGAGGAAAGCCTGAGGATGGACCAAACGGGTATGTTTCTGTGTCGGCCACTGGTTGGGACTAG 1929 0.4697 MALSNGGGTYLDQKPFRSSRRIYVPADCRNNGMPTLTSNESTQSGFAPSNPYGYRQQTRGGLSNGRYGGRGRRRSFVRREETHESNAYLNRDGFYISDKFDNLEIVEEDTTAGATNFDAYEDIPVEASGSEIPPPVHTFAEMELNKGLNKNIKRCKYVKPTPIQRHAIPIAMAGRDLMACAHTGSGKTAAFCFPIISGVLKDRSGFLAMSRGGRIAYPAALIMSPTRELSCQIHDEAKKFAYQIGLKIVAAYGGASIAQQFRVLEKGVDILVATPGRLVDMIERGRVSLTRIKFLALDEADRMLDMGFEPQIRKIVERMDMPPSGARQTMLFSATFPDDIQKLASDFLSNYIFLSIGRVGSSTELIVQKVELVQDRDKRNHLVDLLRSQRLNGANGKQALTLIFVETKRGADALENWLSRKGFPAIAIHGDKVQMERERALRSFKSRATPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSEKNIPLAKALAGLMTEAKQEVPSWLAQYAERSPYSTRSPRRGQRYGSGEYRDFRNVTEVENYSNFSTYGNSDYAENSCIDTTSFDISFPYNDSSYDMANTVPAAATNFHYSDANSGFHGGGKPEDGPNGYVSVSATGWD 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1173 642 CDD SF2_C_DEAD 366 502 - -
Dere03g1173 642 Pfam DEAD/DEAH box helicase 161 343 IPR011545 GO:0003676|GO:0005524
Dere03g1173 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 354 IPR014001 -
Dere03g1173 642 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 108 532 - -
Dere03g1173 642 MobiDBLite consensus disorder prediction 34 63 - -
Dere03g1173 642 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Dere03g1173 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 510 IPR027417 -
Dere03g1173 642 Gene3D - 96 355 IPR027417 -
Dere03g1173 642 FunFam ATP-dependent RNA helicase RhlB 357 535 - -
Dere03g1173 642 SMART ultradead3 156 369 IPR014001 -
Dere03g1173 642 Gene3D - 356 536 IPR027417 -
Dere03g1173 642 MobiDBLite consensus disorder prediction 34 79 - -
Dere03g1173 642 Pfam Helicase conserved C-terminal domain 378 493 IPR001650 -
Dere03g1173 642 SMART helicmild6 412 493 IPR001650 -
Dere03g1173 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 532 IPR001650 -
Dere03g1173 642 MobiDBLite consensus disorder prediction 621 642 - -
Dere03g1173 642 CDD DEADc_DDX3_DDX4 138 360 IPR044763 GO:0003724|GO:0005524
Dere03g1173 642 FunFam Probable ATP-dependent RNA helicase DDX4 99 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1173 Dere-ChrDere03 18847202 18850600 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1173 138 529 Eukaryotic Initiation Factors Gene Family AT1G72730 33.079 6.70e-59 201