Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1170 ATGGCTGAACCAAAGGACAACCATTACGCCTCTATTGAGGATGGGACTAAGAAGAAGAGGAAAAGGAACCGTTCACGGAAATCTGCAACTGGGGAGCAATCGGAATCTCAAGAGGCAAACATGCATGTGGAGGAACAAGGCGAAGAAGCAGGGGAGAATGGTAGTGGGGATAAGGAATCTGCGCAGATGAGTAAGAAGAAGGAGAAGATGGATAAGAAGATGAAGAGTGGTGAAAAAGAGAGTGAGGGGGAAAAGGGCGGAGACGAGGAAGAGGAGGGGAAGGAACCGAGAAAGACAAAGAATGTTGAGTCTGGGATTATGAGCACTGAGTCGTTTGCTTCTCTGGGCCTGTCTGAACCTACTTTTAAGGCCATTAAAGATATGGGATTCGAGCATATGACTCAGATTCAAGCGAGAGCAATTCCACCTCTTTTGATTGGGAAAGATGTTCTTGGTGCTGCGAGAACAGGTTCTGGAAAAACTCTTGCTTTTTTAATACCAGCTGTAGAGCTGTTATACAACGTTCAATTCACTCCTCGAAATGGAACTGGTGTTCTTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCAAAAGAACTTCTCAAGTATCACTCCCAAACCGTGGGATTGGTTATTGGAGGTGCAGCCAGAAAAGGTGAAGCTGAAAGAATTGTTAAAGGGGTAAATCTACTGGTTGCAACTCCTGGTCGTCTTCTCGATCATCTTCAAAATACAAAGGGATTTATATATAAAAACCTGAAGTGCCTGATGATTGATGAAGCTGACAGGATATTAGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTGCCAAAGAATAGGCAAACAGCTTTGTTTTCAGCTACACAGACAAAGAAGGTTGAGGATCTTGCCCGCCTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGAAGGGAGAACCAAGGTCACGAATGAAGGATTGCAGCAAGGCTATGTTGTTGTTCCTTGTGCCAAGCGATTTGTTGTCCTCTATTCCTTCTTGAAGAGATTTCACTCAAAAAAAGTCATGGTCTTTTTCTCTTCATGTAACTCTGTGAAATTCCATGCAGACCTTCTCAATTACATACAGATTGATTGCTTTAACATACATGGAAAACAAAAGCAGCAGACACGTACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGACTTGATATACCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCAAAGGAATATATTCATAGGGTTGGCCGAACAGCTCGAGGGGAAAGTGCAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGTCTATGATGAAAAGAAGCTGGCAAATGTACAATCTCACCTGGAGAAGTTGGTGGCCAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATACTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGACTTACAGGCTGTTGCTGCTTCATTCTGTTTTTCAAATCCTCCGAATGTGAGTTTAGGCATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATGCGTAAAGTTGAAGGAAGCAGACATGGATTTAGCGACAGCAATCCTTATGGAAAAATAAATGCGGACGATAAGCGCCAATTTGTGAGGCATTAG 1794 0.4203 MAEPKDNHYASIEDGTKKKRKRNRSRKSATGEQSESQEANMHVEEQGEEAGENGSGDKESAQMSKKKEKMDKKMKSGEKESEGEKGGDEEEEGKEPRKTKNVESGIMSTESFASLGLSEPTFKAIKDMGFEHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGTGVLVICPTRELAIQTHAVAKELLKYHSQTVGLVIGGAARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDEGRTKVTNEGLQQGYVVVPCAKRFVVLYSFLKRFHSKKVMVFFSSCNSVKFHADLLNYIQIDCFNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGESAKGNALLFLIPEELQFLRYLKAAKVPVKEYVYDEKKLANVQSHLEKLVANNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPNVSLGIDSSASKHRKKMRKVEGSRHGFSDSNPYGKINADDKRQFVRH 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1170 597 MobiDBLite consensus disorder prediction 1 106 - -
Dere03g1170 597 FunFam RNA helicase 327 557 - -
Dere03g1170 597 SMART ultradead3 129 334 IPR014001 -
Dere03g1170 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 317 IPR027417 -
Dere03g1170 597 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 262 270 IPR000629 -
Dere03g1170 597 SMART DUF4217_3 491 554 IPR025313 -
Dere03g1170 597 Gene3D - 327 569 IPR027417 -
Dere03g1170 597 MobiDBLite consensus disorder prediction 557 590 - -
Dere03g1170 597 MobiDBLite consensus disorder prediction 38 83 - -
Dere03g1170 597 Pfam DEAD/DEAH box helicase 134 305 IPR011545 GO:0003676|GO:0005524
Dere03g1170 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 465 IPR027417 -
Dere03g1170 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 490 IPR001650 -
Dere03g1170 597 CDD SF2_C_DEAD 331 461 - -
Dere03g1170 597 Gene3D - 52 320 IPR027417 -
Dere03g1170 597 MobiDBLite consensus disorder prediction 1 18 - -
Dere03g1170 597 SMART helicmild6 370 451 IPR001650 -
Dere03g1170 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 316 IPR014001 -
Dere03g1170 597 Pfam Helicase conserved C-terminal domain 346 450 IPR001650 -
Dere03g1170 597 CDD DEADc_DDX18 121 318 IPR044773 GO:0003724|GO:0005524
Dere03g1170 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 110 138 IPR014014 GO:0003724
Dere03g1170 597 PANTHER RNA HELICASE 64 497 - -
Dere03g1170 597 Pfam Domain of unknown function (DUF4217) 492 552 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1170 Dere-ChrDere03 18821293 18826585 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1170 110 469 Eukaryotic Initiation Factors Gene Family AT3G13920 31.215 1.38e-45 165