Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1163 ATGGGCGAAGAGTTGCTGAAGCGAAACACCGATTGCGTCTATTTCTTGGCTTCCCCCTTCACTTGCAAGAAGGGGCCTGACTGTGAGTATCGGCATAATGAGATTGCAAGACTAAACCCAAGGGATTGCTGGTACTGGTTATCTGGGAACTGCCTTAATCTAACATGTGCCTTTAGACACCCTCCATTGGAAGGGCATACTGGAGTACCATCTGAACCTACACAGCCTTCTTTACCTGCAAACAAGACAACGGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAATAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATTATAGTTCATTTCCTGGTATGCCTGGGAAGAATGACTCTGGAAGCAATGATGCTCTCCCCCTAGAAAACAAGACATTATCAATAAATAAAACAGGTGTAGCAATAACAACTGAAACACATCGTGATCTATGTGAAATTGCCCCAAAGACTCTGCATTATTGTAAATTTCAGCCTATCGAGGTTCTCCAGCAACCAATACCAAAAAATGTTAAACAGCAAGGTATCTATCCAGAGATGTCTGCTTATGAGTATAAAGAAGCTACTGTGATTAGACCAGACTCTGTACTTCGAGAAGAAGACTTTGTTCGAAGCATTTCCCATATATGCACTGAACAGAGTACAGAGGAGCATGTGAATAGTCACATTGAACCTGAGGAGCGACGGGAATCATCCCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGAACTTGGGTTATGAGGATGATTCTGAATTTATACCAGTGCTTGATAGGGAACACAGGGAACTGAATGGGCAATATTTGCGGTATGAATATAAAGACACAGTTGAGTATGATCCTATATGCCCAGAAGCTGACATGCTGTATGAACAAGAGATGTATGATGATTACAGATGTATGGATGGTGATCATACTCTAGCTGATGACCGAAAAGTTCCTGCTTATTCCAGAGAGAGAATCATAGATTCTATATTGTCCAGGAAGAGGATTCGGATGCCAATTGAAATGGCTGCTTGTGACAGGAAGTTAGATCTACGAGACCATCTGAGGAGACGTAGAGAAATGAATGGCCGAGCTGTTGCTGGCTTTTTAAAAAGGCATGAATCATCTTGTCTGATGATTCAGAACCAAGAAAGGCATAGAAGACAAAGTATTGATCAGCGGCTATGTAGAAGATTGACGTCAGAGGTGGGATTGAGCACTAGAGACTCAAATGGAGGGGGTGAAACTCTTTTAATTGCTGACAGAAACGGCTTCATTAGGCACCCTCAGCAACATACATCAAGGAAGCAGCTTTATAAAGAAAAACTTGTTAAACGGCAGTTTCTTCCGTCTAAAATCTCCAGGAAACCAGTTTTAAAGCAAAGGAGATATACTCAAGAGTCTACTACTACTACTACATTTAACGGACCTAAGACTCTAGCAGAAATTAAAGAAGAGAAGAAGAAGGCTGCAGAAAAAGGGCATTTCAAAAGCACTTCGGCTGAATTCCAGGATCCCAAACCTCTAAGTGAAATCCTTAAGGACAAGAAGAGGTTGGATTGTGGGCGAGATAGCAATACCTATAATAACTGA 1602 0.4157 MGEELLKRNTDCVYFLASPFTCKKGPDCEYRHNEIARLNPRDCWYWLSGNCLNLTCAFRHPPLEGHTGVPSEPTQPSLPANKTTVPCYFFFNGFCNKGDRCSFLHGPDYSSFPGMPGKNDSGSNDALPLENKTLSINKTGVAITTETHRDLCEIAPKTLHYCKFQPIEVLQQPIPKNVKQQGIYPEMSAYEYKEATVIRPDSVLREEDFVRSISHICTEQSTEEHVNSHIEPEERRESSPGFDVLVDDEMENLGYEDDSEFIPVLDREHRELNGQYLRYEYKDTVEYDPICPEADMLYEQEMYDDYRCMDGDHTLADDRKVPAYSRERIIDSILSRKRIRMPIEMAACDRKLDLRDHLRRRREMNGRAVAGFLKRHESSCLMIQNQERHRRQSIDQRLCRRLTSEVGLSTRDSNGGGETLLIADRNGFIRHPQQHTSRKQLYKEKLVKRQFLPSKISRKPVLKQRRYTQESTTTTTFNGPKTLAEIKEEKKKAAEKGHFKSTSAEFQDPKPLSEILKDKKRLDCGRDSNTYNN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1163 533 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Dere03g1163 533 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Dere03g1163 533 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Dere03g1163 533 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Dere03g1163 533 Pfam Zinc-finger containing family 7 63 IPR041686 -
Dere03g1163 533 MobiDBLite consensus disorder prediction 489 533 - -
Dere03g1163 533 Gene3D - 73 164 - -
Dere03g1163 533 Gene3D - 3 64 - -
Dere03g1163 533 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Dere03g1163 533 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 528 - -
Dere03g1163 533 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
Dere03g1163 533 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Dere03g1163 533 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Dere03g1163 533 MobiDBLite consensus disorder prediction 489 503 - -
Dere03g1163 533 MobiDBLite consensus disorder prediction 511 526 - -
Dere03g1163 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 107 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1163 Dere-ChrDere03 18725945 18729578 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere03g1163 zf-CCCH_3 1.2e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1163 03 18725945 18729578 Dere03g1163 03 18725945 18729578 ECH