Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1153 ATGGCCTCCTCCACCACACCCAGAGATGAATCCGACTACGACAGCAGCTGTTCCTCCATAACCGTGGCGGAGTCCAGCCGGAGTTGGATGAGCAACCTCAGCTTTGGGAGCCGCCGCCGCAGTAGCAGCTCCTCCGTCTCCGTCTGTTCCACTGCAACTGCCGCCACCGCCACCTCCCAGGGTTCCACCAAGCCCCACAAGGCCAACCTCGTGGCATGGGAGGCCATGCGGCAGCTCCGCCTCGACAAGGGGCGGGTGGGGCTGGACGACTTCCGGCTGCTGCGGCGGCTGGGGAGCGGGGACATCGGGAACGTGTATCTTTGCCAGATAAGGAACCCGGCGGTGGGGTTGCCGCGGTGCTTGTACGCCATGAAGGTGGTGGACAGAGAAGCGCTCGCGAAGAGAAACAAGTTGCAGAGAGCTGAGATGGAGAAGGAGATTCTCGGCATGATCGATCACCCATTTTTGCCAACTTTATACGCCGAGTTCGAAGCTTCTCACTATTCCTGCTTGGTCATGGAGTTCTGTCCCGGCGGCGACTTGTACGCCACTCGGCTTCGCCAGCCAGCAAGACGCTTTAGCATTTCTTCTTCTAAGTTTTATGCCGCGGAGACTCTTGTGGCGCTAGAGTATCTGCACATGATGGGCATAGTGTACAGAGATTTGAAGCCAGAGAACGTACTGATTCGAGAAGACGGTCACATTATGCTTTCAGACTTCGATCTATGTTTCAAATGCGACGTCGTTCCGAAGCTCCTAAGAAGCAAAACCAGATCATCATCGTCGTCGGAACGCAGCTTCAGGACTAGAAAATCCTCAACACCTTCGTGTGCTTCCTCCCCCATGCGCCCCGTTCTATCTTGTTTCTTATTAACAACAACAAAAGGACAAAACGTGCCCCAAGAAGACGAAGAACCGGAGGCATCAGAGTTAGTGGCCGAGCCATTCAACGCAAGGTCCAAGTCATTCGTCGGGACCCACGAGTACTTGGCTCCGGAAGTGATCTCAGGGCAAGGCCATGGAAGCGCAGTGGACTGGTGGACATTCGGAGTGTTCCTGTACGAGATGCTGTACGGGATCACACCCTTCAAAGGGGAGACCAACGAGAGAACACTGATGAACATTCTGAAACAGCCTTTGCGTTTTCCTAGGATGTCGAGCAGCGAGAAGGAAGTGGAGGAGATGAAGAAGGTTCAAGACCTGATAAGGAAGCTGCTAGTGAAGAATCCGAACAAGAGGATTGGAAGCTGCATGGGATCTGTAGAGATCAAGAGGCATGACTTCTTCAAGGGAGTGAACTGGGCTTTGATCAGATCGCATAGGCCACCTTTGGTTCCTAGAGATCAATATTTGAATAGGTTTAGAAGTAGTAGTAATAGTAGCAGTAGAGTTTTGTTGCCAAAGCTTAGCAAGAAGGAGAGGGATGAACCCTATCGGATTACTCCGAGTAATCATAATCATTTTGACTACTTCTAA 1476 0.5251 MASSTTPRDESDYDSSCSSITVAESSRSWMSNLSFGSRRRSSSSSVSVCSTATAATATSQGSTKPHKANLVAWEAMRQLRLDKGRVGLDDFRLLRRLGSGDIGNVYLCQIRNPAVGLPRCLYAMKVVDREALAKRNKLQRAEMEKEILGMIDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYATRLRQPARRFSISSSKFYAAETLVALEYLHMMGIVYRDLKPENVLIREDGHIMLSDFDLCFKCDVVPKLLRSKTRSSSSSERSFRTRKSSTPSCASSPMRPVLSCFLLTTTKGQNVPQEDEEPEASELVAEPFNARSKSFVGTHEYLAPEVISGQGHGSAVDWWTFGVFLYEMLYGITPFKGETNERTLMNILKQPLRFPRMSSSEKEVEEMKKVQDLIRKLLVKNPNKRIGSCMGSVEIKRHDFFKGVNWALIRSHRPPLVPRDQYLNRFRSSSNSSSRVLLPKLSKKERDEPYRITPSNHNHFDYF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1153 491 Gene3D Phosphorylase Kinase; domain 1 88 175 - -
Dere03g1153 491 Pfam Protein kinase domain 320 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1153 491 Pfam Protein kinase domain 92 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1153 491 Gene3D Transferase(Phosphotransferase) domain 1 318 447 - -
Dere03g1153 491 ProSiteProfiles Protein kinase domain profile. 91 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1153 491 FunFam protein kinase PINOID 2 89 175 - -
Dere03g1153 491 Coils Coil 124 144 - -
Dere03g1153 491 CDD STKc_phototropin_like 89 447 - -
Dere03g1153 491 SMART serkin_6 91 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1153 491 PANTHER FLIPPASE KINASE 1-RELATED 28 451 - -
Dere03g1153 491 Gene3D Transferase(Phosphotransferase) domain 1 176 245 - -
Dere03g1153 491 ProSiteProfiles AGC-kinase C-terminal domain profile. 430 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Dere03g1153 491 SUPERFAMILY Protein kinase-like (PK-like) 70 458 IPR011009 -
Dere03g1153 491 FunFam protein kinase PINOID 176 244 - -
Dere03g1153 491 FunFam serine/threonine-protein kinase D6PK-like 318 447 - -
Dere03g1153 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1153 Dere-ChrDere03 18594427 18596246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1153 9 491 AGC Kinase Gene Family AT2G26700 57.678 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Dere03g1153 Pkinase 2.4e-31 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1153 03 18594427 18596246 Dere14g0267 14 2811091 2812764 CCT
Dere03g1153 03 18594427 18596246 Dere03g1153 03 18594427 18596246 ECH