Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1134 ATGCAATTCCCATCGAGCAATCTATTTGCAACCACTAAAGATGGAATATGGTATAATGGGGCAACATTTGGTAGGCAATATGTGCAAGCTTTGGCCAAGGATTTGATAATCATAGTCCCAAAGGTTCTCCCACAGATTGTAAAAGATGTGGAAGTGATTGAAGGAGATGGAGGCCTTGGCACGATCCTCCTCTTCACTTTTTGCTCTGGTTTATCCATGGCAAGTTACCAGAAGGAGAGGATTTTAGAGCTTAATGCCATTTCACATGAAATAGGGTTACAAGTGATCAAAGGTAGGCATCAGAATCAAGGTTTCTTGTGCGACAAGATAAGCTTTCAGCTCTGTGCAAAAGGAAAGGTTCAGACTCTGGTCAACGTTAAGGTTTCTTATGAATATGAAATTGAAGAAACCACCGAGCAGGGAAACTGTGATAAGGTTTTCAAGGCTCCTTTGATCGCAAAGAATTCGTCAATGAAACGGGAGGTGCAGCTAGAGCCGCCACTTGCGCAAAACCTTGGTGATTCCGACCCTTTACTAGATAACCAGCAGGAGGAGGAGCAGAAGGAGGAGGAGTCCCCAGGAAGCACAAGTGAGATTAAGAATGAGGATGTCGAGGGTGGCTTACTTCCGTGTTGTCGAATTTGCCTGGAAAGCGATTCCGACCCTGATGATGAATTGATATCACCATGCATGTGCAAGGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCTTTCTCACACTGCACAACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATTGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTTCTTGTATTTTTGGCTGTACAAACTGTGATTGCTGCAATGGGCGCCTTTGCATACCTCATGGACAAAGATGGGGCCTTCAGGAACTCTTTTGATGATGGTTGGGATCGGATACTGTCAAACCATCCTATACCATTTTATTATACTATTGGAGTACTAGCCTTCTTTGTGCTGCTTGGATTTTTCGGTCTGATACTACATTGCTCCTCCCTCAATACCAATGACTCCAGAATGGCCGGATGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCAGCATCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTTGTCGTTATCTTTGCAATTCTAGGTATAGCTTATAGTTTCCTTGCGGCCACAATGGCGATTCAAAGAATTTGGCAGAGACACTACCACATCCTCACCAAAAGGGAGCTGACCAAGGAATACGTAGTGGAGGATCTCCATGGTTCTTATTCCCCGCCAAAATTGGACCCAGAACATGAAGAGCGCTTGAAAATGCTTAAGCTTTTGTGA 1404 0.4423 MQFPSSNLFATTKDGIWYNGATFGRQYVQALAKDLIIIVPKVLPQIVKDVEVIEGDGGLGTILLFTFCSGLSMASYQKERILELNAISHEIGLQVIKGRHQNQGFLCDKISFQLCAKGKVQTLVNVKVSYEYEIEETTEQGNCDKVFKAPLIAKNSSMKREVQLEPPLAQNLGDSDPLLDNQQEEEQKEEESPGSTSEIKNEDVEGGLLPCCRICLESDSDPDDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAMGAFAYLMDKDGAFRNSFDDGWDRILSNHPIPFYYTIGVLAFFVLLGFFGLILHCSSLNTNDSRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGSYSPPKLDPEHEERLKMLKLL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1134 467 MobiDBLite consensus disorder prediction 166 202 - -
Dere03g1134 467 ProSiteProfiles Zinc finger RING-CH-type profile. 204 269 IPR011016 GO:0008270
Dere03g1134 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 276 IPR013083 -
Dere03g1134 467 Pfam RING-variant domain 212 262 IPR011016 GO:0008270
Dere03g1134 467 Gene3D - 26 151 IPR023393 -
Dere03g1134 467 SMART ringv_2 211 263 IPR011016 GO:0008270
Dere03g1134 467 SUPERFAMILY Bet v1-like 33 133 - -
Dere03g1134 467 Pfam Pathogenesis-related protein Bet v 1 family 39 148 IPR000916 GO:0006952
Dere03g1134 467 SUPERFAMILY RING/U-box 210 267 - -
Dere03g1134 467 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 172 467 - -
Dere03g1134 467 CDD RING_CH-C4HC3_MARCH 212 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1134 Dere-ChrDere03 18258974 18268431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1134 158 467 C3H Transcription Factor Family AT1G11020 77.500 3.05e-167 472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1134 03 18258974 18268431 Dere03g1134 03 18258974 18268431 ECH