Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1125 ATGGCTTCACCTTCTGAGCTTAGCCTGGATTGCAAGCCCCACCATAGCTGTTCCATGCTTCTGAAATCTTTTGCAGATCATCAGACTGATCAGACTCAGACCTGCAAGCTTGAAGAGTTCGTGTCTCGCTTAGAGGAAGAACGTCTGAAGATTGACGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACTAACGCGATGGAGTCCTCAAGGCAGCAACTAGGGGCTTTCAGAGGAAATCAAGGCACAAAAACTGCAGTTCTGGAAGAATTCATACCCTTAAAGCATTCATCTTCTGAAAGCTCTGAGAAGGCATCAAGCACATCTGATAAGGCAAACTGGATGATATCTGCTCAGCTATGGAGCCAAGCGAGCGAAGAAACCAAGCCACAATCCACAATTACGTCCCCTAAAGAAGCTGAAATTGGGTTCGATATTAATCCCAAGCTAGCTCTAGACCCCACACAGAGGAATGGTTGTGGAGCGTTCCTTCCATTCTCAAAGGGACGAAGCTTGAACCAGCAAAGCTCCTCAGTACAGGCTCTTCCAGAGCTGGCTCTTGCCTCTTCCGACGACAAGAAATGCCCAGAGCCTGAGAATTCTGGTAAAGGAGGAAGTAATGGTGAAGTGGTATGTGATCAAGGAAAAGGGACTACAGTCTCATCTGAGGCCAAAGCTACCAGTAAAATAGTTTCCGCTACCACCACTACCCAGACTCATCGGAAAGCAAGACGGTGTTGGTCGCCGGACTTGCACCGACGGTTTGTGAACGCTCTTCAGATGCTTGGTGGATCTCAAGTGGCTACTCCAAAACAAATCAGGGAACTGATGAAGGTTGACGGTTTAACAAATGATGAAGTTAAAAGTCATCTCCAGAAATATAGACTTCACACAAGACGACCCGGCCCAAGCCCACAAGTGGGGGCACCTGCGCCCCAGCTCGTAGTACTAGGAGGAATCTGGGTCCCACCAGCAGGCACCGCCAATGGGTTGTTTAACCCGCACCCTATCTCCCACGCGTCGTCACCGTATTGTACCACCGCCTCAATACCCCAAGACTTGTACCCTGCAACTACCGCGCCGCCACAACCATACAGCCACGGCGTCCTCCACCACCACCTCAACGGGTACAGAACGACGTCGCACACCCAAAGATCGCCGGAGTCTGAGAGCATAGAGGACGGGAAGTCAGAAAGTAGTAGTTGGAAACAGGGAGAGAGTGACGAGAACGAAGGAGAGAGAAAAGGGTTGGGTAGAAGATGGGGAAGAGAGTAA 1281 0.5035 MASPSELSLDCKPHHSCSMLLKSFADHQTDQTQTCKLEEFVSRLEEERLKIDAFKRELPLCMQLLTNAMESSRQQLGAFRGNQGTKTAVLEEFIPLKHSSSESSEKASSTSDKANWMISAQLWSQASEETKPQSTITSPKEAEIGFDINPKLALDPTQRNGCGAFLPFSKGRSLNQQSSSVQALPELALASSDDKKCPEPENSGKGGSNGEVVCDQGKGTTVSSEAKATSKIVSATTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPGPSPQVGAPAPQLVVLGGIWVPPAGTANGLFNPHPISHASSPYCTTASIPQDLYPATTAPPQPYSHGVLHHHLNGYRTTSHTQRSPESESIEDGKSESSSWKQGESDENEGERKGLGRRWGRE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1125 426 MobiDBLite consensus disorder prediction 389 426 - -
Dere03g1125 426 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Dere03g1125 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Dere03g1125 426 Coils Coil 37 57 - -
Dere03g1125 426 MobiDBLite consensus disorder prediction 214 239 - -
Dere03g1125 426 MobiDBLite consensus disorder prediction 190 239 - -
Dere03g1125 426 MobiDBLite consensus disorder prediction 380 426 - -
Dere03g1125 426 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Dere03g1125 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 405 IPR044787 GO:0003700|GO:0006355
Dere03g1125 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Dere03g1125 426 Gene3D - 243 301 - -
Dere03g1125 426 FunFam Myb family transcription factor 243 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1125 Dere-ChrDere03 18079747 18082372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1125 1 330 G2-like Transcription Factor Family AT2G03500 57.059 6.23e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere03g1125 Myb_DNA-binding 8.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1125 03 18079747 18082372 Dere14g0294 14 3022803 3024990 CCT
Dere03g1125 03 18079747 18082372 Dere03g1125 03 18079747 18082372 ECH