Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1099 ATGAGCTGGCGGAGAGTATTGAAGTCTGTTCAGGCCCTCGCTGCCCATACCCTTCTTTTCTCCTTCACTCTTTTGCTCGTCTTCAAGCTCGATCACGTAGTCTCCTGCTCTTGGTGGATAATATTTTTCCCTCTATGGATGTTTCATACTGTTGTGGCTCGAGGACGGTTCTCATTACCTGCACCATCAGTTCCACGTAATCGACATTGGGCACCGTGCCATGCCGTTGTTGCAATACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCATGGTTTTGCAGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGCAGAGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGACGAGGCAATGTGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTCTTCTTCGTTGCTGCTACGGTCTTCACTCTCTTAAAACTGTGTGGTGATGTAGGTGCTCTTGGCTGGTGGGACTTGTTTATTAACTTTGGGATTGCTGAGTGCTTTGCCTTTCTTGTGTGTACAAAATGGTCTAATCCAGTCATTCATAGAAATTCTCGTTCAAGAGAAGCCAGTTCATCTTCTAGTACGATTAGATATCTTGACTGGAATAGTGGATTAGTAGTCTCTTCAGAGGAAAATCAGCGTCAGGATAGAATTTGTGGCCTGCAAGACGTAGGAGGTCACTTCATGAAAGTTCCAGTTATTGGCTTTCAGATTCTTCTTTGTATGCGATTAGAGGGAACACCTGCTGGTGCTAGACATATACCTCTTTCAGTTCTTTTCTCTCCTCTTTTCCTACTGCAAGGTGCTGGTGTACTGTTTGCTGCATCTAAGTTGGTGGAGAAACTTATACTTCTGCTACGTAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCATGCACCATGGTTCTAGGTTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGTGAAGAACAGGCAAGATTGTTCCAAGAGGGTGCATCTGGGTATAACACTTTCAGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTCTGGAGACTCCAGGCAGCTCTTGGTGAGCAGACAGAAATTACAAAATACAGCCAACAGGAGTTTGAAAGACTTCAGAATGAGAAAGTGTTATGCAGAATTTGTTTCGAGGGGGAGATTAGCATTGTATTGCTACCATGCCGGCATCGTATACTCTGCCGCGCATGCTCCGAGAAGTGTAAGAAGTGCCCGGTTTGCCGTGTCTCTATCGAGGAGTGCTTACCTGTATATGATGTATAG 1404 0.4359 MSWRRVLKSVQALAAHTLLFSFTLLLVFKLDHVVSCSWWIIFFPLWMFHTVVARGRFSLPAPSVPRNRHWAPCHAVVAIPLLIAFELLLCIYLESLYVHGFAAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEENMSDEAMWETLPHFWVAISMVFFVAATVFTLLKLCGDVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNSRSREASSSSSTIRYLDWNSGLVVSSEENQRQDRICGLQDVGGHFMKVPVIGFQILLCMRLEGTPAGARHIPLSVLFSPLFLLQGAGVLFAASKLVEKLILLLRSGAGGGIYFRFSSRAHDCLGFMHHGSRLLGWWSIDEGSREEQARLFQEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCRICFEGEISIVLLPCRHRILCRACSEKCKKCPVCRVSIEECLPVYDV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1099 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
Dere03g1099 467 SUPERFAMILY RING/U-box 411 461 - -
Dere03g1099 467 Coils Coil 466 467 - -
Dere03g1099 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Dere03g1099 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Dere03g1099 467 Pfam Transmembrane Fragile-X-F protein 29 292 IPR019396 -
Dere03g1099 467 SMART ring_2 420 454 IPR001841 -
Dere03g1099 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 465 IPR013083 -
Dere03g1099 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1099 Dere-ChrDere03 17616637 17626464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1099 1 467 C3H Transcription Factor Family AT1G73950 72.163 0.0 690
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1099 03 17616637 17626464 Dere03g1099 03 17616637 17626464 ECH