Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1080 ATGGCTGAACCAGAGGACAACCATCACGTCTCTATTGAGGATGGGACTAAGAAGAAGAGGAAACGGAACAGACCACGGAAATCTGCAACTGGGGAGCAATCGGAACCTCAAGAGGCAAACATGCATGTGGAGGAACAAGGCGAAGAAGCAGGGGAGAATGGTGGCGGGGATAAGGAATCTGCGGAGGAGATGAGTAAGAAGAAGAAGAAGAAGAAGGATAAGAAGATGAAGAGTGGTGAAAAAGAGAGTGAGCGGGAAAAGGGCAGAGATGAGAATGAGGAGGAAGAGGAGGGGAAGGAACAGAGAAAGACAAAGCATGTTGGGTCTGGGATTATGAGCACTGAGTCGTTTGCTTCTCTGGATCTGTCTGAAGCTACTTCTAAGGCCATTAAAGATATGGGATTCGAGCATATGACTCAGATTCAAGCGAGAGCAATTCCACCTCTTTTGATTGGGAAAGATGTTCTTGGTGCTGCGAGGACAGGTTCTGGAAAAACTCTTGCTTTTTTAATACCAGCTGTGGAGTTGTTATACAACGTTCAATTCACTCCTCGAAATGGAACTGGTGTTGTTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCAAAAGAACTTCTCAAGTATCACTCCCAAACTGTGGGATTGGTTATTGGAGGTGCAGCCAGAAAAGGTGAAGCTGAAAGAGTTGTTAAAGGGGTAAATCTACTGGTTGCAACTCCTGGTCGTCTTCTCGATCATCTTCAAAATACAAAGGGATTTATATATAAAAACCTGAAGTGCCTGATGATTGATGAAGCTGACAGGATATTAGAAGCAAACTTTGAGGATGAAATGAAGCAGATTATTAAAATCTTGCCAAAGAATAGGCAAACAGCTTTGTTTTCAGCTACACAGACGAAGAAGGTTGAGGATCTTGCCCGCCTGTCATTTCAGACAACTCCTATCTATGTGGATGTAGATGAAGGGAGAACCAAGGTCACGAATGAAGGATTGCAGCAAGGCTATGTTGTTGTTCCTTGTGCCAAGCGATTTGTTGTTCTCTATTCCTTCTTGAAGAGATTTCACTCAAAAAAAGTCATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTCCATGCAGACCTTCTCAATTACATACAGATTGATTGCTTTAACATACATGGAAAACAAAAGCAGCAGACACGTACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGACTTGATATACCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCAAAGGAATATATCCATAGGGTTGGCCGAACAGCTCGAGGGGAAAGTGCAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGTCTATGATGAAAAGAAGCTGGCAAATGTACAATCTCACCTGGAGAAGTTGGTGGCCAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATGCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGACTTACAGGCTGTTGCTGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATGCGTAAAGTTGAAGGAAGCAGACATGGATTTAGCGATAGCAATCCTTATGGAAAAATAAATGCGGATGATAACCGCCAATTTGTGAGGCATTAG 1809 0.4229 MAEPEDNHHVSIEDGTKKKRKRNRPRKSATGEQSEPQEANMHVEEQGEEAGENGGGDKESAEEMSKKKKKKKDKKMKSGEKESEREKGRDENEEEEEGKEQRKTKHVGSGIMSTESFASLDLSEATSKAIKDMGFEHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTVGLVIGGAARKGEAERVVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDEGRTKVTNEGLQQGYVVVPCAKRFVVLYSFLKRFHSKKVMVFFSSCNSVKFHADLLNYIQIDCFNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGESAKGNALLFLIPEELQFLRYLKAAKVPVKEYVYDEKKLANVQSHLEKLVANNYYLNKAAKDAYRSYMLAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGIDSSASKHRKKMRKVEGSRHGFSDSNPYGKINADDNRQFVRH 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1080 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 322 IPR027417 -
Dere03g1080 602 MobiDBLite consensus disorder prediction 38 67 - -
Dere03g1080 602 FunFam RNA helicase 332 562 - -
Dere03g1080 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 143 IPR014014 GO:0003724
Dere03g1080 602 Pfam Domain of unknown function (DUF4217) 497 557 IPR025313 -
Dere03g1080 602 Gene3D - 332 575 IPR027417 -
Dere03g1080 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 321 IPR014001 -
Dere03g1080 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 495 IPR001650 -
Dere03g1080 602 Pfam DEAD/DEAH box helicase 139 310 IPR011545 GO:0003676|GO:0005524
Dere03g1080 602 MobiDBLite consensus disorder prediction 562 602 - -
Dere03g1080 602 MobiDBLite consensus disorder prediction 76 106 - -
Dere03g1080 602 Pfam Helicase conserved C-terminal domain 351 455 IPR001650 -
Dere03g1080 602 Gene3D - 53 325 IPR027417 -
Dere03g1080 602 SMART DUF4217_3 496 559 IPR025313 -
Dere03g1080 602 CDD DEADc_DDX18 126 323 IPR044773 GO:0003724|GO:0005524
Dere03g1080 602 PANTHER RNA HELICASE 67 503 - -
Dere03g1080 602 MobiDBLite consensus disorder prediction 1 112 - -
Dere03g1080 602 SMART helicmild6 375 456 IPR001650 -
Dere03g1080 602 MobiDBLite consensus disorder prediction 1 18 - -
Dere03g1080 602 SMART ultradead3 134 339 IPR014001 -
Dere03g1080 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 470 IPR027417 -
Dere03g1080 602 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Dere03g1080 602 CDD SF2_C_DEAD 336 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1080 Dere-ChrDere03 17217082 17222398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1080 115 474 Eukaryotic Initiation Factors Gene Family AT3G13920 30.194 6.46e-44 160