Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1076 ATGATAACGTCAACGCGCTTTGGAGAGTGCGGTTGCCCTATTCGCGTGCGAGCGAGAACTTGTTCTCTTATCCTGCAAAACCATCATCGTTTCCTTCTCTATATTATCAATCATGTCCTCTCTTCCCCGCCTGCGTCTCCTGATCTTCCTGCAACTAGGATCTTCAATCGGTTGATTCGTCGTCTGTTTGTGCGTTGGCAGATTCGGGTTCTGCTTCGTCATCGGTTCGACCGTATTTCGGTGAGTGAAACGATGGACCCGATGGACATCATTGGGAAATCGAAGGAGGATGCTTCGCTTCCTAAAGCAACTATGACAAAAATAATTAAAGAGATGTTACCCCCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCATCAGAGTCCAATGAAGTCTGTAGCAAAGAGGAGAAAAGGACAATTGCACCTGAGCATGTATTGAAGGCATTAGAGGTTCTTGGATTTGGTGAGTATATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGATTGAGACCATGCAGGACTCTTTAAAAGGAGGCAAATGGAGCAATGGAGCAGAGATGACCGAGGAAGAAGCACTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCTCGTGCTAGAATGAATGGTGAGGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGAGAGCTAA 723 0.4537 MITSTRFGECGCPIRVRARTCSLILQNHHRFLLYIINHVLSSPPASPDLPATRIFNRLIRRLFVRWQIRVLLRHRFDRISVSETMDPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEAIASKQPDADQSLES 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1076 240 FunFam Negative cofactor 2 beta 90 227 - -
Dere03g1076 240 Gene3D Histone, subunit A 89 229 IPR009072 GO:0046982
Dere03g1076 240 PANTHER PROTEIN DR1 HOMOLOG 85 239 IPR044255 -
Dere03g1076 240 SUPERFAMILY Histone-fold 96 227 IPR009072 GO:0046982
Dere03g1076 240 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 98 163 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1076 Dere-ChrDere03 17156023 17161555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1076 85 233 CCAAT-DR1 Transcription Factor Family AT5G23090 85.235 4.09e-91 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere03g1076 CBFD_NFYB_HMF 6.6e-22 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1076 03 17156023 17161555 Dere03g1076 03 17156023 17161555 ECH