Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1071 ATGGAAAACCTAGAGACCTCATCAGAATGTCCACTTTCTTCTCAAAACTCAAACAGAAATCACTCTTTCATGCATCGTGAATCAGGCAATAAGCCCTATGTGATCACAGAGAGGAAGATCACGAAGGTTTCAAAAAGAGCAGACCAGATGATGAATGAGAGAAAGTACCTTGGAGTGAGACGAAGGCCTTCAGGAAGATGGGTTGCTGAGATCAAGGACTCCTCACAGAAGCTGAGGCTTTGGCTTGGAACTTTTGACAGAGCAGAAGATGCTGCTCTGGCTTATGACTGCGCTGCTAGGCTTCTAAGAGGAAGAAATGCCAAGACAAACTTTCAAAGCTCATCAGGGATGATCATGAACTCACACGAGGAAAACTGCAGCTTTTTGGGTAAGAATCCAAGGGCTTACCAGATTCTTAAGCATGCAATCATGAAGAACCACCATGCAGTACTCTCCTCCACAACCATGCCTTGGAAGAATCAGATCAACAATATCATGAGAGACGAATTCGACACACTTGTTGAAGAAACTATAGTTTGCTCCTCCAGCAGTTCCGAAGAAGGTTCATCTTCTTCTTCAGGGTGTTGTGGGATTATATTTGGAAGTTCTAAGGTATATTCTTCTGTTGTTGTAACTCCTTCTTTCAGTGCCTCATTTTGTCAAACAGATGAGCGTCATCAAGAAACCGCACAGCAAGCCTTAGTCATATCTCACTCTACATGA 723 0.4329 MENLETSSECPLSSQNSNRNHSFMHRESGNKPYVITERKITKVSKRADQMMNERKYLGVRRRPSGRWVAEIKDSSQKLRLWLGTFDRAEDAALAYDCAARLLRGRNAKTNFQSSSGMIMNSHEENCSFLGKNPRAYQILKHAIMKNHHAVLSSTTMPWKNQINNIMRDEFDTLVEETIVCSSSSSEEGSSSSSGCCGIIFGSSKVYSSVVVTPSFSASFCQTDERHQETAQQALVISHST 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1071 240 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 41 160 - -
Dere03g1071 240 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Dere03g1071 240 MobiDBLite consensus disorder prediction 1 31 - -
Dere03g1071 240 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Dere03g1071 240 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Dere03g1071 240 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Dere03g1071 240 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Dere03g1071 240 MobiDBLite consensus disorder prediction 1 23 - -
Dere03g1071 240 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
Dere03g1071 240 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Dere03g1071 240 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Dere03g1071 240 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1071 Dere-ChrDere03 17034321 17035043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1071 52 111 AP2-EREBP Transcription Factor Family AT5G19790 68.333 2.82e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g1071 AP2 4.4e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1071 03 17034321 17035043 Dere03g1071 03 17034321 17035043 ECH