Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1061 ATGGCACAAGATACTATTTCTATTGCTGAATCGGCACGGAGACGTTCTGGTCTATTGCGAGATCAGGTTCAGCTACTAAAAAGAAAGGACTCTGACCGCTATGAAATTGTCCCAATTCAAGATCCTTTGTCATTTGAGAAAGGTTTCTTCATAGTTATTCGTGCATGCCAATTGCTGGCTCAAAAGAATGATGGGATAATATTAGTAGGAGTTGCAGGTCCCTCTGGAGCAGGAAAGACTGTTTTCACTGAGAAGGTCCTCAACTTTATGCCAAGCATCACTGTCTTAACAATGGACAACTATAATGATTCTAGTCGAATCATTGATGGCAACTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTCGAAAATGTACAGGGTCTTAAAGCAGGGAAGTCCGTTCAGGTCCCAATATATGATTTCAAGTCTAGCTCTCGCACAGGTTATAGGACTGTTGAAGTTCCTAGCTCCCATATTGTCATCATAGAAGGCATCTATGCCTTAAGTGAAAAACTACGGCCTTTGCTTGATCTTCGAGTGTCTGTCACTGGTGGAGTTCATTTTGACCTTGTTAAACGGGTTTTGCGAGACATTCAACGTGCCAGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAGGCTTTTATTGAGCCAGATCTCCAAACGGCACATATAAAAATCATTAATAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCAACAAGAGCTGTGACAGTGGATCAAATTAAGGCCATTTTTGCTGCAGAACATGCTGAAACCACAGAGGAAACATACGACATTTATCTTCTACCACCTGGGGAAGATCCTGAAGCATGTCAGTCATATTTGAGGATGAGAAACCGGGATGGAAAATACAATCTCATGTTTGAGGAATGGGTTACAGACAGTCCATTCATAATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGGTACACAATCGCAGCTATCCTGAAAAGATGCAGTCATATCTTTCATGATGATAAAGTGTGTGTAAAAACTGATTGGTTAGAACAACTTAATCGCTTATATGTTCAGGTGCAAGGAAGGGATAGAAACTATGTTAAATATATGGCAGAGAAACTGGGGTTGGATGGTTCATATGTTCCTCGTACTTACATTGAACAAATTCAACTAGAAAAGCTTGTAAATGATGTGATGGCACTACCAGATGATCTGAAGACAAAACTCAGCATAGATGATGATTTAGTTTTGAGTCCTAAAGAAGCACTTTCCAGAGCTTCAGCTGATAGGAGAATGAAGTATCTTAATCGCGGTGTTTCACAATCTTATTCAAATCAAAGGGACAAAACTCTATCTAAGTTGACTAGACTAGCTATAAACAACAGAAGATTTGATGGGAGAGCTCTGGAATCACCTGCAGCAATTACAAACCAAGGAGTCTTTACTCAATTGTCTGAACAAATTTCAACATTAAATGAGAGAATGGATGATTTCACTTCCCGTATTGAAGAGCTAAATTCAAAGTTTGCAGTCAGAAAAGTTTCAGCCAGTCAACAAAACTTGGCTTCCCAGGCTGAAGCCTGCAATGGCTCTGGACCCACTTCTCTCTTTGTGACAGGGTTGGGCAATGGTTCATTGACTGGATCACTTTTGCCTAATTCTTCCTCTTCTTCCCAGCTGGCAAGGGATACCCCCTTGATGGAAGAGGTTTTACTCATTACACGAGGACAACGTCAAATCATGCATCAGCTAGACACTCTGAGCCATCTTCTGCATGAATACTTTGGTCAGAGATCAGGCCTAGGAAGAGCAGAACAGACAAGCAGAACGCGAGAGGTTGACTTCACCATCCCGTTGGTTCTGACTTTGGCAATCGGTGCCGCAGGTGTCATTCTGTTCAAGGGTCTTACAACCCAAAAATGA 1983 0.415 MAQDTISIAESARRRSGLLRDQVQLLKRKDSDRYEIVPIQDPLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSITVLTMDNYNDSSRIIDGNFDDPRLTDYDTLLENVQGLKAGKSVQVPIYDFKSSSRTGYRTVEVPSSHIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRASQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSTRAVTVDQIKAIFAAEHAETTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRCSHIFHDDKVCVKTDWLEQLNRLYVQVQGRDRNYVKYMAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVLSPKEALSRASADRRMKYLNRGVSQSYSNQRDKTLSKLTRLAINNRRFDGRALESPAAITNQGVFTQLSEQISTLNERMDDFTSRIEELNSKFAVRKVSASQQNLASQAEACNGSGPTSLFVTGLGNGSLTGSLLPNSSSSSQLARDTPLMEEVLLITRGQRQIMHQLDTLSHLLHEYFGQRSGLGRAEQTSRTREVDFTIPLVLTLAIGAAGVILFKGLTTQK 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1061 660 CDD UMPK_like 68 240 - -
Dere03g1061 660 Gene3D - 254 414 - -
Dere03g1061 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 237 IPR027417 -
Dere03g1061 660 PANTHER URIDINE KINASE 19 424 - -
Dere03g1061 660 Gene3D - 67 246 IPR027417 -
Dere03g1061 660 SUPERFAMILY CYTH-like phosphatases 260 408 IPR033469 -
Dere03g1061 660 PRINTS Uridine kinase signature 189 199 - -
Dere03g1061 660 PRINTS Uridine kinase signature 133 148 - -
Dere03g1061 660 PRINTS Uridine kinase signature 66 83 - -
Dere03g1061 660 PRINTS Uridine kinase signature 225 238 - -
Dere03g1061 660 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Dere03g1061 660 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Dere03g1061 660 Pfam CYTH domain 273 405 IPR023577 -
Dere03g1061 660 Coils Coil 501 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1061 Dere-ChrDere03 16855990 16864906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1061 67 237 PRT Gene Family AT5G40870 26.111 3.01e-16 80.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2176 09 31135859 31150454 Dere03g1061 03 16855990 16864906 CCT
Dere03g1061 03 16855990 16864906 Dere03g1061 03 16855990 16864906 ECH