Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1050 ATGGGGTGCTCATTTTCTGGGTTGAATGCATTATACGATAACGTAAATGGGGGAGCAGATGTGTGGATCAACGAGAACCGATTCCGCATCGTGAGGCAGCTCGGGGAAGGTGGGTTTTCCTACGTTTACTTGGTCAAGGAGGTGGTAACCGACTCCTCTCCTGGCGGTGGTCTCTCGAAGAGGCTTAAAGACTCCTCCCATGTCTCCGATGATGGAACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTGAGGGAGGAGATCCGTGTTTCATCGCTCTTCAGTCATCCAAATCTGCTTCCACTTCTTGATCATGCAATTATTTCTGTTAAGCCTACCAAAGAAACATCTTGGAACCATGAAGCATACTTATTATTTCCTGTTCATTTGGATGGAACCTTGCTGGACATTTCTCAAATGATGAAAGCCAAGAAAGAGTTCTTTTCTACGTCAGATGTACTTCAAATATTTTGGCAGCTAGCTGCAGGGCTCAAGCACATGCACGGTTTAGATCCTCCGCAAGCACATAATGATGTCAAACCTGGTAATGTTGTAATAACACACAGAAAAGGACAACCACCTCTTGCCATACTGATGGATTTTGGTAGTGCTCGACCTGCCAGGAGGCAAATTCGCTCTCGATCAGAGGCACTACAATTGCAGGAATGGGCAGCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAATTGTGGGATTGCCCAAGCCATGCTGATATAGATGAGAGGACTGATATCTGGTCACTAGGATGCACACTGTATGCAATAATGTATGGAGTATCTCCATTTGAATATGCACTAGGAGAATCTGGGGGAAGCCTGCAACTGGCCATCGTGAATGCTCAAATCAAATGGCCAACAGGACCTAAGATTCCATATCCGGATGCTCTCCATCAATTTGTTACATGGATGCTTCAGCCGCAGGCCGCTGTACGTCCACGGATAGATGATATTGTTATCCATGTTGACAAGTTGATTGCCAAATTCTCTCAATGA 1032 0.4564 MGCSFSGLNALYDNVNGGADVWINENRFRIVRQLGEGGFSYVYLVKEVVTDSSPGGGLSKRLKDSSHVSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISVKPTKETSWNHEAYLLFPVHLDGTLLDISQMMKAKKEFFSTSDVLQIFWQLAAGLKHMHGLDPPQAHNDVKPGNVVITHRKGQPPLAILMDFGSARPARRQIRSRSEALQLQEWAAEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPTGPKIPYPDALHQFVTWMLQPQAAVRPRIDDIVIHVDKLIAKFSQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1050 343 CDD STKc_16 27 339 - -
Dere03g1050 343 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 341 - -
Dere03g1050 343 Gene3D Transferase(Phosphotransferase) domain 1 14 342 - -
Dere03g1050 343 ProSiteProfiles Protein kinase domain profile. 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1050 343 SMART serkin_6 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1050 343 Pfam Protein kinase domain 66 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g1050 343 SUPERFAMILY Protein kinase-like (PK-like) 20 333 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1050 Dere-ChrDere03 16615613 16619963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1050 33 296 EF-hand Containing Proteins AT4G04710 26.119 6.88e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Dere03g1050 Pkinase 1.3e-28 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1050 03 16615613 16619963 Dere03g1050 03 16615613 16619963 ECH