Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1046 ATGTCCACAAAAATACCTGCGAAACCTTCCATTACGTCACCAATGGCAGATGTCACCTACCTTCGCCTTCACGAACCAGATGACGATCCTCACCTTCCTGAGCAAACTCTAATTCTTGATTCTATCCCCTACTGGTCCCATAACGATTTCGATTTCTATGCTTCTGATCCAGAATTTCCACCGGCTGATCACTCCCTCCAGGCTCGCACTGCCTCTCGCGATAGTCGCTTGTCTCAGCGATTTGAATCCACTATCTCTATTCGAGGTGACGACGACTTCTCTGACCCTGGATCGAACCCCAGCAACGATCTACTGGACCGCGAAAACCAGGTAAATTTCGTTATGGATCTATTTCAGCAACGTGTTGAGCAATCGCAGATCATGGGTCATAGCGATTTGGTCTCCGAAGTGCTGGATGATTCGACTTTTGGTATTATTGATGGAGACTGTGATGTGGGTGTTGATGGTTTGGGTCTGGATTTGGGATTAGGTTTAGGATTTGGTGTTGATAGGGATTCCTTGCAGGGTGATGACGACAGTGGGTTTATGGTTGAAAATTATGGTTCTGGTGGTGGTGGTGGTGATGGTGGCGACTTTTTCATTGGAAGGAGGGTTTCTGGATCTGAATCTGCGGGGACACCATCAACGGCAAGCCGAATTCGGCCTTTTGATAATTGTGTTCGTCTTGTGGCGTTTGGTTCAGATTCTGATGACGAGGAGAATGGAGTTTTGGGTATGTGCATGCATTCAGAAGATGAGTATAATGTGCATGATGAGAGCGACGATGTTGCGAGCATCCCTCTCTGTTGGGATTCCCTTCAACTGGAGGATAACAGGGAGAATAACGAAGATTTTGAGTGGGAGGAAGTTGATGGTCGGGTTGACGAGAGGGATGTTTTGAGCATGTTCACGGGTGAGGATGATAGGTCGATATCTGTTTCAGTCTCACCAAATGGGCTTGAAGAGGTAAGTGCTGCAAGGGTGGGTGGTATAGAAAACTTGGGGTGGGAAGTTTTGTTGAATGCCAATAATTTAGACGCGAACCCTGATTTGGATCACGATGCAGAACCTTATTTTGGTGATCATGATGACTATATTTATACTGCAGAGTATGAAATGATGTTTGGCCAATTTGCTGAGAATGAGAATCCAGTAGTGGGTCGGCCTCCCGCTTCCACATCTGTTGTTCAGAATCTGCCATCAGTGATTGTGACCAAAGAAGATATCGAGAAAAATAATGCACTTTGTGCAGTTTGTAAGGATGAGCTTAGTGTTGAAGAACAAGCTAAACAGTTGCCATGTTCACATCGCTACCATGGTGAATGCATTATACCATGGTTGGGAATTCGGAATACTTGCCCTGTTTGTCGATATGAGTTTCCTACCGATGATGCTGAATACGAGCGTAGGAGGATACACAGATCTGGCCGTAGCTTGTGA 1440 0.459 MSTKIPAKPSITSPMADVTYLRLHEPDDDPHLPEQTLILDSIPYWSHNDFDFYASDPEFPPADHSLQARTASRDSRLSQRFESTISIRGDDDFSDPGSNPSNDLLDRENQVNFVMDLFQQRVEQSQIMGHSDLVSEVLDDSTFGIIDGDCDVGVDGLGLDLGLGLGFGVDRDSLQGDDDSGFMVENYGSGGGGGDGGDFFIGRRVSGSESAGTPSTASRIRPFDNCVRLVAFGSDSDDEENGVLGMCMHSEDEYNVHDESDDVASIPLCWDSLQLEDNRENNEDFEWEEVDGRVDERDVLSMFTGEDDRSISVSVSPNGLEEVSAARVGGIENLGWEVLLNANNLDANPDLDHDAEPYFGDHDDYIYTAEYEMMFGQFAENENPVVGRPPASTSVVQNLPSVIVTKEDIEKNNALCAVCKDELSVEEQAKQLPCSHRYHGECIIPWLGIRNTCPVCRYEFPTDDAEYERRRIHRSGRSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1046 479 FunFam E3 ubiquitin-protein ligase RING1-like 377 463 - -
Dere03g1046 479 MobiDBLite consensus disorder prediction 56 79 - -
Dere03g1046 479 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 285 461 - -
Dere03g1046 479 ProSiteProfiles Zinc finger RING-type profile. 416 457 IPR001841 -
Dere03g1046 479 SMART ring_2 416 456 IPR001841 -
Dere03g1046 479 Pfam Ring finger domain 416 457 IPR001841 -
Dere03g1046 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 463 IPR013083 -
Dere03g1046 479 SUPERFAMILY RING/U-box 396 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1046 Dere-ChrDere03 16561676 16564734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1046 264 463 C3H Transcription Factor Family AT5G60820 49.765 9.67e-59 197