Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1043 ATGCTTTGCTTTCACGGTGCCTTTCTCACTATCCTTATTCGCGTCAACACTCCTGGAATTGAAAAGTTCTGGATGGAGGTTCCTCGAGCGCGTTCCTTCGGAACGCAAGGAAGAAGAAAACCCACGCATGACTTTCTGTCACTGTACAGTCACTCAAGTGTCCAACAAGATCCTCCAAGGCCGCCTTCTCAAGGAAGTTACCTCAAAACCCATGATTTCTTGCAGCCACTAGAACGCAAAGGAAGGAAAGCTAGTAGTGCCAAGGAAGATGCAGCAGCAGAGGAAATATCTTCGAAGGTTGATAAGCCACAACCTCTGGTCGAGCACCACCTACCAGGAGGGATTGGGACTTACAGTATCAGCCACATTTCCTATTTCAATAACCAAAGACATCAAAAGCCGGAGGCATCCGTTTTCACGGTGGCTCAAGAAAGTAGCACGGACAGAAATAATGAGAACTCTAACTGCAGTTCCTACAGTGGAAATGGTTTCACTTTGTGGGAGGAGTCTGCAGTTAACAAGGGAAAGACAGGGAAGGAGAATAATGCGGTGGACAAGCCCATTTCTGGAGACTCTGCGGCAAAGCTGGGGCAGTGGGCGTTGCCGGAGAGAACGTCGCAGTCGTATTCCATCACTCATCACAACAGCTTCAACTCTCTCCCTTCCTCTCAGACAACTGCGCAGAAGAGCCAGAGTTTCATTGAAATGATAAAATCCGCAAAGGGCGATTGTGCCCAGGATGAGGAGTTTGGCAGTGAAGCATTCATTCTTAAGAAAGAATGCTCCAATACCGAAATAGGAGAATTGAGAGTGAAAGTTGATGGTAAGAGCACTGATCAAAAGCCAAACACACCACGATCAAAACATTCTGCGACAGAGCAGCGTAGAAGGAGCAAAATCAATGACAGATTCCAGATGTTAAGAGAGCTTATTCCCCAGAGTGACCAGAAGAGGGATAAAGCGTCTTTTTTGTTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCATAAGTATGAAGGATCATACCAAGGGTGGAGCCATGAGGCAGAAAAATTGATGCCATGGAGAAATAATCACAGGCCTGCTGAAAGTTATGTTGATCAATGTCGTGGCACAAATGGCGGTTCAGTGCAGTGTCAGACTTACTCTAGCGCCACAGAGGTGACTGTTGCTAATGATAAGGTGAAAGAGAAAGGTCTCACTATTGAAGGCGGTACTATTAGCATGTCAAGTGTGTACTCAAGAGGGCTGTTAAATAAACTAACACAAGCACTGCAGAGTTCAGGAGTGGATTTGTCACGAGCTAGCGTCTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAACATCGGACAATCTGTACCAACGTCAGGTGCTAAGGATGATGAGCTTGTTTCTAGGAATCAAGAGATGGCACGCTTTAGAGTTGTCAGCACTGAAGATTCTGACAAACCAGTAAAGAAGCTAAAAGCACGCAGAAACTAA 1491 0.4561 MLCFHGAFLTILIRVNTPGIEKFWMEVPRARSFGTQGRRKPTHDFLSLYSHSSVQQDPPRPPSQGSYLKTHDFLQPLERKGRKASSAKEDAAAEEISSKVDKPQPLVEHHLPGGIGTYSISHISYFNNQRHQKPEASVFTVAQESSTDRNNENSNCSSYSGNGFTLWEESAVNKGKTGKENNAVDKPISGDSAAKLGQWALPERTSQSYSITHHNSFNSLPSSQTTAQKSQSFIEMIKSAKGDCAQDEEFGSEAFILKKECSNTEIGELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPQSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSYQGWSHEAEKLMPWRNNHRPAESYVDQCRGTNGGSVQCQTYSSATEVTVANDKVKEKGLTIEGGTISMSSVYSRGLLNKLTQALQSSGVDLSRASVSVQIELGKQANIGQSVPTSGAKDDELVSRNQEMARFRVVSTEDSDKPVKKLKARRN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1043 496 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 37 381 IPR044295 GO:0003700|GO:0006351|GO:0046983
Dere03g1043 496 FunFam BHLH domain class transcription factor 282 354 - -
Dere03g1043 496 Pfam Helix-loop-helix DNA-binding domain 286 335 IPR011598 GO:0046983
Dere03g1043 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 361 IPR036638 GO:0046983
Dere03g1043 496 SMART finulus 290 340 IPR011598 GO:0046983
Dere03g1043 496 MobiDBLite consensus disorder prediction 78 106 - -
Dere03g1043 496 MobiDBLite consensus disorder prediction 477 496 - -
Dere03g1043 496 Gene3D - 281 356 IPR036638 GO:0046983
Dere03g1043 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983
Dere03g1043 496 MobiDBLite consensus disorder prediction 78 113 - -
Dere03g1043 496 MobiDBLite consensus disorder prediction 272 299 - -
Dere03g1043 496 CDD bHLH_AtBIM_like 283 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1043 Dere-ChrDere03 16455378 16463043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1043 408 492 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 43.529 8.04e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g1043 HLH 2.6e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1043 03 16455378 16463043 Dere03g1043 03 16455378 16463043 ECH