Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1022 ATGCGCCTCACCTCCACCCGATACTTCCTCATCTTCCATGTGTCTCTAGTGCTATTGGGCCTGCCTGCCTTTCTTCCGCCAGTCATTCACTCTGTTTCTTCCTCTTTAGCTGACATGATAGCCTTTGCTGTTTGCATTGAGCATATTCACCTACTGTTTAATCATGTATTGTTTGCTTTCTCTTTGGCTCTGATTCTAGCACATGTAATGGAGTCTTGGAGTTTCGTTTCTGGACATAAGGGTTTTGTGTCTAATAATACTCTTCCATCTCCATATACACTCGCGAGAAGCAAAGATTCCTTTCTGGGTTGGGACTTGAAAGCCCAATCTAGTTTTTCAAACGGCAGTTTAGTCTCGGGTCAACAAAATATAGAGAGTCAAGCTTGTGAGGAATTGGGGTTTCCAGAAATGTTGGGGAAACAGTTGTCCAATGATCCGATTGGCCGTGTTGTGAGCGCCCCAAATGCATTTTCTGGTGGCGAAGACTATAATTCAAAGCTTTCGAACTCTGTGGTTGAATCTAACAGCCGGGATTCCCTCATTGATTTGAAGCTAGGACGAGTTGGTGATCACAGAGATGTCAATGAATCGCCATTTTTGAAAGGTAATCCCATTTTGTGTTCTTCAGAGTCATCTACGAACCCCAACAGAGTGAGAGCTTCAGGGGTTCAGTCACAGATTGCTTACTGCCAAGTCTATGGCTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCTAAAGTTATAGTGAACGGCATCGAGCAGAGATTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGAAGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGCCGTAGAAAGCCACAAATGGGTATTAATTCTGGAAAGACCAGGAGGTTGAATCAGTCATATAATGATGGCAGATTCCACGGTAGCATGCTAACAACATCATCTTTTATCCGCCAAGACATACTCCCTAGTGGTGTTTTGCATTCTGAGAAACATGGCACTGATAACTGGTGGAAACCGATAAAGGTTAAAGGTGGGACTGATTTTAGGCCTATCTCTGCCATACCTATCACAAGTGGACATTCTCAATCAAGGTCTCTGTTTCTTTCACATGCTGAAAAGCAATTTCCCTTTCTAAATGAAAGTGGTGCTACGTCCACTGCAGGAAGCTTATTCTGTGAGAACAATAGTCAATATTCACCTGTTCTTGGGGAACCTCATTCTTTACCACGATCATTATACCAAGACACCTTTTTAGGAAGTGAGGATTTCAATGTTTTTGATACAGCATCAACCGTTCAGGGATTATCAGGACTTACAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCATTCATCAGAAATTCCCATGCCACGCCCCATGGTTATTCCAAGCGGCCACAGCCATTACAACATGAGTCAGGTCTCTGAAAGGTTAATAGCAATAAGCTCACAGGCTTCTTCAGGTGGGATGTCTGCTAGCTTTCCATCAGAAATGAACCCGCCTGATGGAGGTCATCTTGGTCCTGTATTGCTATCAAACAATAATGATATTGCCAACATAGAAATGGCAAATGGTATTTTACAAGGGTCAGATGTCGTGGATATGAAATCCCGCTTTTCCTGTGAAGATGGCCCCACCATAGACTTGCTTCAACTGTCAGCACAGCTCCACCGAGTTGAGCATCAAAGGCAATCCTTGCAGGTGAAGCATGAAAATGATTCTTTCTGCTCCCTCCGGATTACTTAG 1830 0.4393 MRLTSTRYFLIFHVSLVLLGLPAFLPPVIHSVSSSLADMIAFAVCIEHIHLLFNHVLFAFSLALILAHVMESWSFVSGHKGFVSNNTLPSPYTLARSKDSFLGWDLKAQSSFSNGSLVSGQQNIESQACEELGFPEMLGKQLSNDPIGRVVSAPNAFSGGEDYNSKLSNSVVESNSRDSLIDLKLGRVGDHRDVNESPFLKGNPILCSSESSTNPNRVRASGVQSQIAYCQVYGCNKDLSASKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEVKRSCRKRLAGHNERRRKPQMGINSGKTRRLNQSYNDGRFHGSMLTTSSFIRQDILPSGVLHSEKHGTDNWWKPIKVKGGTDFRPISAIPITSGHSQSRSLFLSHAEKQFPFLNESGATSTAGSLFCENNSQYSPVLGEPHSLPRSLYQDTFLGSEDFNVFDTASTVQGLSGLTDSGCALSLLSSQSQNSSSHSSEIPMPRPMVIPSGHSHYNMSQVSERLIAISSQASSGGMSASFPSEMNPPDGGHLGPVLLSNNNDIANIEMANGILQGSDVVDMKSRFSCEDGPTIDLLQLSAQLHRVEHQRQSLQVKHENDSFCSLRIT 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1022 609 Gene3D - 220 291 IPR036893 GO:0003677|GO:0005634
Dere03g1022 609 MobiDBLite consensus disorder prediction 295 318 - -
Dere03g1022 609 Pfam SBP domain 230 303 IPR004333 GO:0003677
Dere03g1022 609 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 135 596 IPR044817 GO:0003677
Dere03g1022 609 ProSiteProfiles Zinc finger SBP-type profile. 227 304 IPR004333 GO:0003677
Dere03g1022 609 FunFam Squamosa promoter-binding-like protein 14 221 291 - -
Dere03g1022 609 SUPERFAMILY SBT domain 228 307 IPR036893 GO:0003677|GO:0005634
Dere03g1022 609 Coils Coil 577 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1022 Dere-ChrDere03 16090615 16096965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1022 217 347 SBP-box Gene Family AT1G69170 58.779 9.76e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere03g1022 SBP 4.8e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1022 03 16090615 16096965 Dere03g1022 03 16090615 16096965 ECH