Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1019 ATGCAACCAGAAACAAGCCCTGACTATGGCCAAAGCGACTGGGCCATACGCGAATTGACCCTCGTTGTATTCATCATCTTCGCTTTTTCTATCCTACCTGTCCTCTGCTACATCTTTGATCAGCATCGTCGGCGTCGCCGACGCCGATACCATCTTCCCACAAACACCGCCATGGCCACCACCCTTGATCCCTCCCTTTTCCGCTTCCTTCCCCCCTTCACTTACTCCTTCCGCCGCCCGACGCCGGAGTGCGCCATCTGCTTGTCGGAGTTCGAGGAAGGCGACGAAGGGCGCATGCTGCCGAACTGTAACCACGTCTTTCACCGCCGGTGCATTGACGCGTGGTTCCGATCTCACTCCACCTGTCCGATGTGCCGAGTTCCTGTTCAGCCGCCGAAGATCTCCTCGGAGAAGGAAAATCCAGAGGCGTCTCTTTCGGCGGGATTCCCGAACCTGGTTCTTCCCGCGCCGATTTGGTGTCCGAGAAAGCCATTGCAGAAGATGGCATTGGTGGAAGTAATAGTAATGATTAGAGGGGAAGAAGACGATGAGAGGTTTCGTGTTGAAGGTCGTCGGAGTCGGATAGAAGGGGTTGAAAAGTTCGGATCAACAGATTCTGAGATTGAACAGAAATTTGAGCAGTAG 645 0.5411 MQPETSPDYGQSDWAIRELTLVVFIIFAFSILPVLCYIFDQHRRRRRRRYHLPTNTAMATTLDPSLFRFLPPFTYSFRRPTPECAICLSEFEEGDEGRMLPNCNHVFHRRCIDAWFRSHSTCPMCRVPVQPPKISSEKENPEASLSAGFPNLVLPAPIWCPRKPLQKMALVEVIVMIRGEEDDERFRVEGRRSRIEGVEKFGSTDSEIEQKFEQ 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1019 214 Pfam Ring finger domain 83 126 IPR001841 -
Dere03g1019 214 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Dere03g1019 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 145 - -
Dere03g1019 214 SUPERFAMILY RING/U-box 83 132 - -
Dere03g1019 214 CDD RING-H2_EL5-like 83 126 - -
Dere03g1019 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 130 IPR013083 -
Dere03g1019 214 SMART ring_2 84 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1019 Dere-ChrDere03 16078010 16078654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1019 54 130 Rapid Response to Elicitors AT3G16720 53.165 1.41e-23 94.0