Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1017 ATGGAACCATACACCAGTCCCGGCCCTGTCATATGGGTCTTCTTCTTCCCAATACTCATTGTTCTCATCTTCTTTTTCCAAATTTTCTTCTGCCTCTGTCGCAGCCATGGCCGTCAGCCCGACGACGATGACGACCAAAACATATCTTTTCCTCCTCCGGCCGCCCGCCTTGACCCTGCTCTCTTCAAGTTCCTTCCCACCTTCACTTACTCCTCCGCCGCTAGCCCTCCGCCGGAGTGTGTCATCTGCCTGATGGAGTTCCAAGAAGGCGACCAAGGGCGCGTGCTCCCGAACTGCAAGCACATGTTTCACCGCAACTGCATCGATACGTGGTTCCGATCGCACTGCAACTGCCCGTTGTGCCGAGCGCCGGTGGAACCGCCAAGAAACTCGCCGCGAGATGTGAATGCTGAAGAAGCGTCTGCTTCAGAGGGTCGCTTGGCGGGTTCCCCGAATGAAAATCTTCCTCCGCCGAGTAGGTGTCCGAGAAAGCCGTTGCCGATGATGGAATTGGCGGGAATCATAGTAGAGATTCGCGGGGAAGACGAGGCTGAGAGGATAAGCAGAAGGCCGTTCCGTTGA 582 0.5601 MEPYTSPGPVIWVFFFPILIVLIFFFQIFFCLCRSHGRQPDDDDDQNISFPPPAARLDPALFKFLPTFTYSSAASPPPECVICLMEFQEGDQGRVLPNCKHMFHRNCIDTWFRSHCNCPLCRAPVEPPRNSPRDVNAEEASASEGRLAGSPNENLPPPSRCPRKPLPMMELAGIIVEIRGEDEAERISRRPFR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1017 193 ProSiteProfiles Zinc finger RING-type profile. 80 122 IPR001841 -
Dere03g1017 193 SUPERFAMILY RING/U-box 79 130 - -
Dere03g1017 193 MobiDBLite consensus disorder prediction 127 165 - -
Dere03g1017 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 130 IPR013083 -
Dere03g1017 193 CDD RING-H2_EL5-like 79 122 - -
Dere03g1017 193 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 126 IPR044675 -
Dere03g1017 193 Pfam Ring finger domain 79 122 IPR001841 -
Dere03g1017 193 SMART ring_2 80 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1017 Dere-ChrDere03 16067940 16068521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1017 57 126 Rapid Response to Elicitors AT3G16720 57.746 3.66e-24 94.7