Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1007 ATGGGTTCAACAAGTGAAACAGCTCCTCTCTTAGAGCACAAGCTGTTTTTATCTTTGTGTTACATCGTTTCTCCCCACCCACAGGAAGGTGAAAAGAAGGATAATGCACCGGTGAGTGAGGTGTCAGACCTTGAACATGGTGATGCAGTACCAGCAGCAAATGTGGGTTTCTTTCGGGTGCTTTCACTTGCAAAGCCTGAAGCTGGGAAGCTGATAGTTGCCATGTTGGCTCTGTTAATTGCATCCACATCAGGAATTTTACTTCCAAAATTTGGTGGGAAGATAATTGATATTGTCTCAGGAGATACTCAAACTCCTGAAGATAAAGCTGAAGCTTTGGATGCTATCAAGAACACCATACTGTATATTTTTCTGATTGTTGTTGTTGGTTCTGTTTCTACAGCACTTGAAGATTGGCTTTTTTCCTCTGCTAGTGAAAGGGTTGTTGCTCGATTGAGAAAAAGATTGTTTAGTCACCTCATAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACTGGGGAACTTCTGAGTAGGCTATCAGAAGATACACAGATCATAAAAAATGCTGCAACTACCAATCTTTCTCATGCCCTGAGTAGCTTCTCAACCGCATTTATTGGTCTTGTCTTCATGTTTTCAACATCATGGAAGTTAACTTTGTTGGCTTTGGCTGTTGTGCCTGCTACTTTTGTTGCTGCACGTAAATTTGGTTGGTTCCTACGTGAACTTTCTCAAAAAACTCAAGATGCTGCTGCAGTAGCTGCTTCAATAGCTGAAGAATCCTTTGGTGCCATAAGGACAGTAAGATCTTTTGCACAAGAAGAATATGAAAAATCACGCTACTCTGGGAAAGTTGACGAGACACTTAAGCTTGGTCTTAAACTAGCTAAAGTTGGCGGACTCTTTTCTGGAGGCATTTACATAGCAACTACAGCGCCAATATTTGTAGTTGTTATATATGGGGCTTACTTGACAATTACAGATTCCATGTCCTCTGGTGATCTTACGTCTTTTATTCTTTACAGTCTCACAGTGGGACAAGCTATATCTGGTCTCTCAGGATTGTATACCACAACTATGAGAACTGTGGGTGCAAGCAGACGAGTATTTCAACTTCTAGATCGTGTCTCATCAATGCCAAAATCAGGAAATAGATGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTAGATGATGTTTGGTTTGCTTATCCATCACGTCCTAGTCATATGGTACTTAAGGGAATTACTATGAAACTGAAGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGTGGTGGAAAGACTACAATAGCAAACATAATTGAAAGATTCTATGACCCAGCCAAGGGAAAGATTCTACTTAATGGGGTTCCACTGGTAGAAATATCACATGAACATCTACACAAAAAGATTAGTATTGTGAGTCAAGAGCCTGTACTTTTCAACTGTTCCATTGAGGAGAACATAGCCTATGGACTTGAAGGCAAAGTTAACCCTGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCACATGAATTCATATCGAAATTCCCAGATAAATACCAGACCCATGTTGGAGAACGTGGGGTAAGGCTTTCAGGAGGCCAGAAACAGAGAATAGCAATTGCTAGAGCTTTGCTTATGGACCCGAAAATTCTTCTTCTGGATGAAGCCACTAGTGCTTTGGATGCTGAAAGTGAATATTTAGTACAGGATGCTATGGACTCTCTCATGAAGGGAAGGACAGTTCTTGTTATTGCTCACAGACTATCAACTGTTAAAACTGCTGATATAGTTGCAGTGGTTTCTGATGGTCAAATAGTTGAGAGTGGCACCCATGAAGACCTTCTTAGCAAGAATGGTGTCTACCCTGCATTAGTCAGTAGACAACTACAGACAGTGAAAACTGAAATCTAG 1929 0.4116 MGSTSETAPLLEHKLFLSLCYIVSPHPQEGEKKDNAPVSEVSDLEHGDAVPAANVGFFRVLSLAKPEAGKLIVAMLALLIASTSGILLPKFGGKIIDIVSGDTQTPEDKAEALDAIKNTILYIFLIVVVGSVSTALEDWLFSSASERVVARLRKRLFSHLINQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSHALSSFSTAFIGLVFMFSTSWKLTLLALAVVPATFVAARKFGWFLRELSQKTQDAAAVAASIAEESFGAIRTVRSFAQEEYEKSRYSGKVDETLKLGLKLAKVGGLFSGGIYIATTAPIFVVVIYGAYLTITDSMSSGDLTSFILYSLTVGQAISGLSGLYTTTMRTVGASRRVFQLLDRVSSMPKSGNRCPLGDQDGEVELDDVWFAYPSRPSHMVLKGITMKLKPGSKVALVGPSGGGKTTIANIIERFYDPAKGKILLNGVPLVEISHEHLHKKISIVSQEPVLFNCSIEENIAYGLEGKVNPVDIENAAKMANAHEFISKFPDKYQTHVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKTADIVAVVSDGQIVESGTHEDLLSKNGVYPALVSRQLQTVKTEI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1007 642 SUPERFAMILY ABC transporter transmembrane region 59 375 IPR036640 GO:0005524|GO:0016020
Dere03g1007 642 PIRSF ABC_prm/ATPase_B 13 642 - -
Dere03g1007 642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 633 IPR003439 GO:0005524
Dere03g1007 642 SMART AAA_5 423 617 IPR003593 GO:0016887
Dere03g1007 642 Gene3D - 394 637 IPR027417 -
Dere03g1007 642 FunFam ABC transporter B family member 25 394 636 - -
Dere03g1007 642 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g1007 642 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 47 637 IPR039421 -
Dere03g1007 642 Pfam ABC transporter transmembrane region 71 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g1007 642 Pfam ABC transporter 414 564 IPR003439 GO:0005524
Dere03g1007 642 Gene3D ABC transporter type 1, transmembrane domain 121 393 IPR036640 GO:0005524|GO:0016020
Dere03g1007 642 CDD ABC_6TM_AtABCB27_like 74 370 - -
Dere03g1007 642 ProSitePatterns ABC transporters family signature. 536 550 IPR017871 GO:0005524|GO:0016887
Dere03g1007 642 FunFam ABC transporter B family member 25 123 393 - -
Dere03g1007 642 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Dere03g1007 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1007 Dere-ChrDere03 15944471 15949687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1007 85 634 Calmodulin-binding Proteins AT2G36910 37.993 6.18e-107 349