Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1001 ATGATTGGAAATTCGAGAAAAGGTTATCAAGGGAAGCAAGAAGGTGATGATAGTGGTACTGCTCTTCATCATCATCAACATCATATCATTGATAACAGTGCAGAGAAGTTGTACTGTAAGGCAGCCTCTTCTTCTTCTACTTCAAGACAATGGTCAGGTCTAAGAAACCCAAGAATCGTTCGAGTGTCGCGTTCATTTGGAGGAAAAGATAGGCACAGCAAGGTGTGCACCATTAGAGGGCTTAGGGACAGGAGGATTAGGCTGTCTGTGCCCACAGCGATTCAGCTATATGAGCTTCAAGATCGGCTTGGGCTGAGCCAGCCCAGCAAGGTCATTGATTGGCTCATTGAAGCTACTAAACATGACATTGATAAGCTCCCACCCCTTCAAATCCCTCTTGGCTTTCCTCAATTTCTTCACCACCACCAACAACAACAAACCCTACTTCCTGATCATGAATCAAGTTCTTCCTCCCACCCAGTCTTACCTTCTCAGTTTGGAGCTTTCTATGATGCTAATAACAACAATATTAACAGTTTCATGGATATTGCAGTGCCAAGGCTTATAAAAGGAAAAGAATTAGATGAAAGAGGAGGGTGTGTATGGGATAAAGGCAAGTGGGTTAAAACAGATATTAACGAAGAAGATCATGGAATTGGTGGTTCTGCAGCTCAGAATCTTTTCCCAACTGGGAGTAATACTACTTCCTCTCACTCTTCTTTACCTATGACATATTATAATTCCTATCATTCTGAGCCTTCGAATCTTCTATCTTTATTTGGAAGCCATGGATTGTTTCCTAATAATTCCCAGATAGATCATCCTGGCCATAACAGTACTACTGTGCAATTTCCATCTTCTTCATCTGGTTCCCAATTGCTGTTTTGTCCAACTACTAGTGCAGCAGCAACACCATCACTTTTTGCTCCTTATTATGCTCCATATACCTCAGTCTCTCTGGAAAATGACCCAAGATTACAACAATTGAACCACATTCAGTTGATGAGCTCATCAAGTTCTCATCATCAGGTGTTGCCTCATCATCATCATCCTCTCGTTCTTCCATCTCTGAAACCCTTTATTCCAACACTACCTTTTAGCTCCAGGCTTCTTGATTCGAACAATAAGGACACTACTGCTTCTTGA 1146 0.418 MIGNSRKGYQGKQEGDDSGTALHHHQHHIIDNSAEKLYCKAASSSSTSRQWSGLRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYELQDRLGLSQPSKVIDWLIEATKHDIDKLPPLQIPLGFPQFLHHHQQQQTLLPDHESSSSSHPVLPSQFGAFYDANNNNINSFMDIAVPRLIKGKELDERGGCVWDKGKWVKTDINEEDHGIGGSAAQNLFPTGSNTTSSHSSLPMTYYNSYHSEPSNLLSLFGSHGLFPNNSQIDHPGHNSTTVQFPSSSSGSQLLFCPTTSAAATPSLFAPYYAPYTSVSLENDPRLQQLNHIQLMSSSSSHHQVLPHHHHPLVLPSLKPFIPTLPFSSRLLDSNNKDTTAS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1001 381 MobiDBLite consensus disorder prediction 1 26 - -
Dere03g1001 381 Pfam TCP family transcription factor 68 155 IPR017887 -
Dere03g1001 381 ProSiteProfiles TCP domain profile. 68 126 IPR017887 -
Dere03g1001 381 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 34 342 IPR005333 GO:0003700
Dere03g1001 381 MobiDBLite consensus disorder prediction 10 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1001 Dere-ChrDere03 15860134 15861279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g1001 10 340 TCP Transcription Factor Family AT5G60970 42.363 8.05e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dere03g1001 TCP 5.7e-25 No_clan