Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0969 ATGGAGGAAGATCAAGAATCCAAACATGTGTGTAGGTTCTGCAGGAAAAGCTTTCCCTGTGGGAGATCCTTGGGGGGTCACATGAGGTCCCACATCGCCAGCAACAATTCAGCAGAAACAGAGGAGAAGCTTGCTGCGAGGAAGCTCAAGCTCAAGAATCCAAACATGGAGAATGGCGAAGCAGGAACTAACACTGGCTATGATCTGAGAGAGAAGCGCAAGAAGACTTGGAGAGTCGCTGATTCAAGTGACGACACTCTGATATCAAACAAGTTCTGCAAACAGTGTGGTAAAGGGTTTCACTCTTGGAAGGCTCTGTTTGGCCACATGAAATGTCACTCAGAGAGAGAAAGAGCTTCCATTAATGGTGATATCTTGGACGATCAAGATTCGTGGGCTACCGTGGACAGCCAGTCCGACAATGAAGCTCCAAATCGAAGAAGAAGATCAAAGAGAACAAGAACAACAACCTCGTCTCTGTCTTTTCCCAATCCATCCTCCTCTGTTTCCGAAATCGAGCAAGAGCAAGAAGAAGTCGCTATGAGCTTGATGATGCTTAGTAGGGACATGGGTCCTTGGGGGTTCCAAGAAATGGGGTCTGAGAAAAACGCAAAAAGATCAGAACTTTCGGCTTCTGATCAGTCTCCAGGAAGTTGGTTTACGATGAACAAGACTAAGAAGCTAGATGTTCAGTCTGCAATGGAGGATTCTGAGGAAGCCGATGATGAACAAGGCAAGAAGTACTACAAGTTTCTGGGTTCTGAACTGAACTCAAACCCCTCGAAGAATTCTGACAAGAGAGTCAAGTTCGAGTGTACTACCTGCAACAAGATCTTCCATTCTTACCAAGCTCTTGGAGGCCATAGAGCAAGCCATAAGAAGATCACCAGAGGCTGCTTTGCTTCAATAGAAGAGAGCAACGAAAACACCATAGAAACTGGTGTCTCCCACCGTGAAGTGGTTTCTGGTTTTGATCTTCATGAAGAAGCAGAGTCTAAGAAGAAGAACAGCCATGAATGTCCGATTTGCCTTAGGATTTTTCTATCTGGGCAAGCATTGGGTGGGCATAAGAGATCCCATTTGGCTGGTGGGTCCGAAAGTCAAAAGGATCAAAGTACAGTTCAGGAAATTAGGGATTTGATTGATCTTAATCTTCCTGCTTCTGATGCTGCAGAGGAAGAAAGCAACAATAATAGCCATTCTGAGTCTTGCGGATCACCCTGGTGGGTAAGAGGAAGCCATAAGCAGGAGGCTATGGATCCATGTCTTCTACTTGAAGGTATTTCTGTTCATATTCTTCAAGTAGTTCACAAGATGAACTTTTGA 1326 0.451 MEEDQESKHVCRFCRKSFPCGRSLGGHMRSHIASNNSAETEEKLAARKLKLKNPNMENGEAGTNTGYDLREKRKKTWRVADSSDDTLISNKFCKQCGKGFHSWKALFGHMKCHSERERASINGDILDDQDSWATVDSQSDNEAPNRRRRSKRTRTTTSSLSFPNPSSSVSEIEQEQEEVAMSLMMLSRDMGPWGFQEMGSEKNAKRSELSASDQSPGSWFTMNKTKKLDVQSAMEDSEEADDEQGKKYYKFLGSELNSNPSKNSDKRVKFECTTCNKIFHSYQALGGHRASHKKITRGCFASIEESNENTIETGVSHREVVSGFDLHEEAESKKKNSHECPICLRIFLSGQALGGHKRSHLAGGSESQKDQSTVQEIRDLIDLNLPASDAAEEESNNNSHSESCGSPWWVRGSHKQEAMDPCLLLEGISVHILQVVHKMNF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0969 441 SUPERFAMILY beta-beta-alpha zinc fingers 9 113 IPR036236 -
Dere03g0969 441 Pfam C2H2-type zinc finger 9 31 - -
Dere03g0969 441 Pfam C2H2-type zinc finger 270 294 - -
Dere03g0969 441 Pfam C2H2-type zinc finger 338 362 - -
Dere03g0969 441 Pfam C2H2-type zinc finger 93 114 - -
Dere03g0969 441 MobiDBLite consensus disorder prediction 132 175 - -
Dere03g0969 441 Gene3D Classic Zinc Finger 1 118 - -
Dere03g0969 441 MobiDBLite consensus disorder prediction 155 175 - -
Dere03g0969 441 Gene3D Classic Zinc Finger 267 360 - -
Dere03g0969 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Dere03g0969 441 MobiDBLite consensus disorder prediction 194 221 - -
Dere03g0969 441 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Dere03g0969 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 408 - -
Dere03g0969 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 292 IPR013087 -
Dere03g0969 441 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
Dere03g0969 441 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Dere03g0969 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 338 360 IPR013087 -
Dere03g0969 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Dere03g0969 441 ProSitePatterns Zinc finger C2H2 type domain signature. 340 360 IPR013087 -
Dere03g0969 441 SUPERFAMILY beta-beta-alpha zinc fingers 270 360 IPR036236 -
Dere03g0969 441 SMART c2h2final6 91 113 IPR013087 -
Dere03g0969 441 SMART c2h2final6 9 31 IPR013087 -
Dere03g0969 441 SMART c2h2final6 338 360 IPR013087 -
Dere03g0969 441 SMART c2h2final6 270 292 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0969 Dere-ChrDere03 14869018 14870451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0969 1 387 C2H2 Transcription Factor Family AT1G26610 33.682 6.43e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere03g0969 zf-C2H2_6 9.5e-09 CL0361