Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0960 ATGTCAGAGCAGGAAACACAGTCACGGGGCTTCCTGTTCATCTGTTTCTTAATCCTTTTTTCAGGTAAAATTGTTGCCATAGATTCTCTGAACACGGAGAGAGAAATTCTGCTAAAGCTGAAATCTTACCTGGATAATCAAACTCTAGCAGATCGGGGAAGATACACACACTGGAACACAAACAGCTCAAGTCCTTGTGAATGGCCGGGAATCACGTGCAGCCCCACCGGAGCAACCGCGACAACAAGGGTGGTCGGCGTAGACCTCTCCGACAGCGGCATCTCCGGCGAGATTTTCCAGAATTTCTCGCAGCTCGCTGAGCTCACTCACCTTGACCTCTCCAGAAACACCATCTCCGGAGAGATTCCAGAGGATTTAAGGCGATGCAGTAACCTCGTATATCTCAATCTCTCTCATAATCTTCTTGAGGGACAGATGAATTTGACTGGATTGACAAGGCTAGAGACACTGGACTTGTCGGAAAACAGGCTTCATATGGATATTGGGATGAATTTTCCTGCCATTTGTGACAGTTTAGTCACTTTCAATGCGTCTGGGAATAACTTCACTGGTTTCATTGATAGCTGCTTCGATCAGTGTTTGAAATTGCAGTACCTGGATTTGAGCACTAACAATCTCAGTGGGGGTATTTGGATGGGATTTGCGAGGCTGAAGGAGTTTTCAGTTTCAGAGAACTATCTCACAGGGCCTATAAAGGAACAAGCTTTCCCAGAAAATTGTAACCTTGAAGTGCTTGATGTTTCAGACAACGGCTTTACAGGAAATGCCCCGAAGAATATCAGTAAGTGTAAGAATCTAGTGATTCTGAATCTTTCTAGTAACAAACTTTCTGGCGACATTCCCATTGAATTGGGATCCATCCTAGGCCTTCAAGTATTGTACTTGGCCAACAATACTTTTTCAAGAAACATCCCGGAGACCTTTTCAAACTTGACCAAGCTAGAGTTCTTGGATTTGAGCAGAAACAGTTTTGGTGGAGAGATACAAGAGACACTTGGGAAGTTCAAGCAGGTGAAGTTCCTTCTTTTGCATTCAAATTCTTACACAACAGGATTAAACTTATCAGGAATTCTCAAATTGCCAAACATCACCCGCTTAGACCTTAGCAACAACAGTTTTTCAGGTCCATTACCTATTGAAATCTCTCAGATGTCTTCTCTGAAGTTCTTAATGTTAGCCCACAATCAGTTCAGTGGACCTATTCCTCTTGAGTTTGGAAATTTGCCTCAGCTTCAAGCACTTGATCTGTCATTCAACAATTTAATAGGGCCAATCCCCCCAAGCCTTGGAAACTTGGGTTCTCTCTTATGGCTGATGCTTGCAAACAATTCATTGAGTGGAGAAATCCCAAAAGAGTTGGGAAACTGCACAAGCTTGTTGTGGCTAAACCTTGCAAACAATAAGCTCACTGGGAATTTTCCTTCTGAATTGACCAGCATTGGAAGAAACGCCATGGCCACGTTTGAATTGAATCGGGAAGACGATGGAATCATTGCTGGTTCTGGTGAGTGTTTAGCAATGAAAAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATAGCATCCTCACAAGAAAAAATTGCAGAAGCATTTGGGATAGATTACTTAAAGGCTATGGAATTTTCCCGATTTGCTCATCTGGGTCCCTTTATCGATTACCGGAGATTTCTGGGTATGTTCAGTTAAGTGGGAATAATCTCATCGGAGAGGTTCCTTCAGAAATTGGGAAGATGCAAAATTTTAGTATGCTGCATTTGGGGTTGAACCAATTTTCCGGGAAAATCCCTGCTGTGATGGGAGATTTGCCACTTGTTGTCTTGAACATAACAAGAAACAATCTTTCAGGTGAAATTCCATGGAACATTGGAAACCTTAAATGTCTGAGGAATCTGGATTTGTCGTATAACAATTTCTCAGGAACATTCCCAACGAGCTTGAACAACTTGACGGAGCTCAGTAAATTCAACATCTCTTACAATCCCTTCATTTCTGGTACAATCCCACCAACAGGGCAATTAGCTACATTCGATAGAGATTCTTATTTAGGAGACCCACTCTTGGACCTCCCAAACTTTATCGATAACGTCGAAGACGAAAATAAAAATACGACCTCTCACAGCAACCAGAGAATCAATAACCCCTCAAGATTTTCGAAGTTCTTGATATTCCTAGCTCTCACACTTGCTTTCTTGGTATTAGGACTCCTCACTCTCATAGTTTGTTTAATAATGAAAACCCCATCACAAGACCCAGAAGGATACCTCTTGGAAGACATGAAACACCGACACGACTCCGACAATTCCTCACCATGGTTGTCCGACACAGTTAAGGTTATCCGTTTGAACAGAACAGCATTTACACACGCCGACATTCTCAAAGCCACCGGCAACTTCTCCGACGACAGAGTCATCGGAAAAGGCGGTTTTGGCACCGTGTACAGAGGAGTCTTCCCTGACGGAAGAGAAGTCGCAGTGAAGAAGCTTCAGAGAGAAGGAATCGATGGAGAGAAAGCGTTCAGAGCAGAAATGGAGGTCCTAAGCGGAAACGGGTTCGGGTGGCCCCACCCGAATTTAGTCACACTATACGGGTGGTGCCTAGACGGGTCAGAGAAAATCCTAGTGTACGAATACATGCAAGGAGGAAGCTTGGAAGATGTTATTACAGACAGAACAAGACTCTCGTGGAAGAGAAGGCTAGAGATCTCCATTGACGTGGCTCGAGCCTTGGTCTATTTACACCACGAGTGCTTCCCTCCTATTGTTCATAGAGACGTGAAGGCTAGCAATGTCTTGTTAGATAAACAAGGGAAGGCTAAAGTCACGGACTTTGGGCTAGCGAGAGTGGTGGAAAATGGGGTTAGTCACGTGACCACCATGGTGGCTGGGACAGTGGGCTACGTGGCACCTGAGTATGGTCAGACGTGGCAGGCCACAACGAAAGGTGACGTGTATAGTTTTGGTGTTTTGGCTATGGAATTAGCAACCGGGAGGAGGGCGGTGGATGGAGGGGAGGAGTGCTTGTTGGAGTGGGCTCGTCGAGTCATGGGTTATGGGTATAAATTTGGGCTTGAGCTTGGGCTTGAAAATGGGCTTGAGTTAAATCGGTGTGTCATACCGGTTTTGTTGATGGGTTCTGGGCTCGGAGACGGGGCAGAAGAGTTGGGTGAGTTGTTACAAATTGGGGTGAGGTGCACGGCGGAGGCGCCGCAAGCTAGGCCTAACATGAAAGAGGTTCTGTGTATGTTGGTTAACATATTAGACTCCAAAGGAGATTAA 3303 0.4484 MSEQETQSRGFLFICFLILFSGKIVAIDSLNTEREILLKLKSYLDNQTLADRGRYTHWNTNSSSPCEWPGITCSPTGATATTRVVGVDLSDSGISGEIFQNFSQLAELTHLDLSRNTISGEIPEDLRRCSNLVYLNLSHNLLEGQMNLTGLTRLETLDLSENRLHMDIGMNFPAICDSLVTFNASGNNFTGFIDSCFDQCLKLQYLDLSTNNLSGGIWMGFARLKEFSVSENYLTGPIKEQAFPENCNLEVLDVSDNGFTGNAPKNISKCKNLVILNLSSNKLSGDIPIELGSILGLQVLYLANNTFSRNIPETFSNLTKLEFLDLSRNSFGGEIQETLGKFKQVKFLLLHSNSYTTGLNLSGILKLPNITRLDLSNNSFSGPLPIEISQMSSLKFLMLAHNQFSGPIPLEFGNLPQLQALDLSFNNLIGPIPPSLGNLGSLLWLMLANNSLSGEIPKELGNCTSLLWLNLANNKLTGNFPSELTSIGRNAMATFELNREDDGIIAGSGECLAMKRWIPADYPPFSFVYSILTRKNCRSIWDRLLKGYGIFPICSSGSLYRLPEISGYVQLSGNNLIGEVPSEIGKMQNFSMLHLGLNQFSGKIPAVMGDLPLVVLNITRNNLSGEIPWNIGNLKCLRNLDLSYNNFSGTFPTSLNNLTELSKFNISYNPFISGTIPPTGQLATFDRDSYLGDPLLDLPNFIDNVEDENKNTTSHSNQRINNPSRFSKFLIFLALTLAFLVLGLLTLIVCLIMKTPSQDPEGYLLEDMKHRHDSDNSSPWLSDTVKVIRLNRTAFTHADILKATGNFSDDRVIGKGGFGTVYRGVFPDGREVAVKKLQREGIDGEKAFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYMQGGSLEDVITDRTRLSWKRRLEISIDVARALVYLHHECFPPIVHRDVKASNVLLDKQGKAKVTDFGLARVVENGVSHVTTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLLEWARRVMGYGYKFGLELGLENGLELNRCVIPVLLMGSGLGDGAEELGELLQIGVRCTAEAPQARPNMKEVLCMLVNILDSKGD 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0960 1100 FunFam Nuclear pore complex protein NUP107 30 195 - -
Dere03g0960 1100 FunFam Putative LRR receptor-like serine/threonine-protein kinase 342 503 - -
Dere03g0960 1100 CDD STKc_IRAK 813 1094 - -
Dere03g0960 1100 SUPERFAMILY L domain-like 568 682 - -
Dere03g0960 1100 PRINTS Leucine-rich repeat signature 108 121 - -
Dere03g0960 1100 PRINTS Leucine-rich repeat signature 151 164 - -
Dere03g0960 1100 SMART serkin_6 807 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0960 1100 SUPERFAMILY RNI-like 81 289 - -
Dere03g0960 1100 Gene3D Ribonuclease Inhibitor 315 497 IPR032675 -
Dere03g0960 1100 Gene3D Ribonuclease Inhibitor 30 314 IPR032675 -
Dere03g0960 1100 FunFam Leucine-rich repeat receptor protein kinase MSP1 769 886 - -
Dere03g0960 1100 ProSiteProfiles Leucine-rich repeat profile. 131 152 IPR001611 GO:0005515
Dere03g0960 1100 Gene3D Transferase(Phosphotransferase) domain 1 887 1099 - -
Dere03g0960 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Dere03g0960 1100 Pfam Protein kinase domain 808 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0960 1100 Pfam Leucine Rich repeat 246 261 IPR001611 GO:0005515
Dere03g0960 1100 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 366 1092 - -
Dere03g0960 1100 ProSitePatterns Protein kinases ATP-binding region signature. 813 836 IPR017441 GO:0005524
Dere03g0960 1100 SUPERFAMILY Protein kinase-like (PK-like) 789 1091 IPR011009 -
Dere03g0960 1100 Gene3D Ribonuclease Inhibitor 548 713 IPR032675 -
Dere03g0960 1100 Gene3D Phosphorylase Kinase; domain 1 770 886 - -
Dere03g0960 1100 FunFam Leucine-rich repeat receptor-like protein kinase 887 1100 - -
Dere03g0960 1100 FunFam Calmodulin-binding receptor kinase CaMRLK 222 337 - -
Dere03g0960 1100 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Dere03g0960 1100 ProSiteProfiles Protein kinase domain profile. 807 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0960 1100 SMART LRR_typ_2 151 178 IPR003591 -
Dere03g0960 1100 SMART LRR_typ_2 415 438 IPR003591 -
Dere03g0960 1100 SMART LRR_typ_2 634 658 IPR003591 -
Dere03g0960 1100 SMART LRR_typ_2 105 129 IPR003591 -
Dere03g0960 1100 SMART LRR_typ_2 367 391 IPR003591 -
Dere03g0960 1100 SMART LRR_typ_2 318 342 IPR003591 -
Dere03g0960 1100 SMART LRR_typ_2 294 317 IPR003591 -
Dere03g0960 1100 SMART LRR_typ_2 439 463 IPR003591 -
Dere03g0960 1100 Pfam Leucine rich repeat 368 428 IPR001611 GO:0005515
Dere03g0960 1100 Pfam Leucine rich repeat 100 142 IPR001611 GO:0005515
Dere03g0960 1100 SUPERFAMILY L domain-like 222 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0960 Dere-ChrDere03 14714137 14717709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0960 12 1091 Receptor kinase-like Gene Family AT1G55610 31.640 5.25e-143 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Dere03g0960 Pkinase 2.7e-46 CL0016