Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0955 ATGGGTTGTGTGAGTTCGAAGCAGGCGGTGTCGGTGACGCCTGCTATTGACCACTCCGGTGTGTTTCGTGGCAATGCGGGTACGGTTAATTCGGGAAGGAATTTGGGAGATTTGGATAAGAAGAAGAGTGAGTCAGTGGGACTGAGTAGAAGCGAGGTGGGTGAGTCAGCGAGGGCGAGTTCAAATGGAGGTTGTGAGTCGTTGAGCTTCAGATTGGGGAATCTGCAAAAGTATGTAGAAGGTGAACAAGTGGCCGCGGGTTGGCCGGCTTGGCTTAGCGCCGTCGCCGGTGAAGCAATTCAGGGTTGGGTGCCCCTCCGTGCTGATGCGTTTGAGAAACTGGAGAAGATTGGACAAGGTACATACAGCAGTGTCTTTCGAGCACGAGACCTTGAGACAGGGAAGATAGTGGCTCTGAAGAAGGTGCGGTTTGACAACTTTGAGCCAGAAAGTGTAAGGTTTATGGCCCGAGAAATAATGATTCTCAGAAGGCTTGATCATCCAAACATTGTAAAATTAGAGGGCTTGATTACTTCCAAATTGTCATGTAGCATATATCTTGTATTCGAGTATATGGAGCATGACATTACAGGGCTCTTATCTTCCCCAGATATCAAGTTTAGTGAATCACAGATTAAATGCTACATGAAGCAGTTGTTATCTGGGCTTGACCATTGTCACTCACGGGGTGTAATGCATCGGGACATCAAAGGATCTAATCTTCTGGTGAATAATGAAGGAATACTCAAGGTGGCTGATTTTGGACTGGCAAACTTCTCTAGTTCTGGGCGCAGGCAACCCCTCACAAGTCGTGTTGTCACCTTATGGTACCGTCCTCCTGAACTTTTGCTGGGTTCAACTGACTATGGTCCATCTGTGGATCTGTGGAGCATTGGCTGTGTATTTGCAGAACTACTTGTTGGGAAGCCTATCCTTCAAGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGGTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACGTTGTTTAAACCACAGCAACCATATAATAGTTGTCTCCAAGAGACCTTTAAAGATTTGCCTCCATCAAGTGTGAATTTGCTACAAACTCTTCTTTCCGTTGAACCATACAAACGTGGAACTGCCTCCTCTGCTCTCTCGTCAGAGTATTTCAAAACGAAGCCATATGCATGTGAGCCATCAAGCTTGCCTACATACCCACCTAGCAAGGAGATCGATGCGAAACACCGGGAGGAGTCAAGGAGGAAAAGGATTGGTGGAAGAGCTCGCGGAACTGAAGCAAGAAAACCATCGCGAAAGCCACTAGGATTCAATAAATTAGTGCCCACAGAGGATTTGGCAAGTCAAACCCAGAATTCCCAAAGGGTCAATGGCAGATCAGTCCACATTCTTAAAGAAGGGAACACCAACATAGTTGGGGAGGAACCGAAGCCATCTAGTGGTAAACCAGAAGACGCTTCCCATACAAAGAATGCATCTCAAGGAGATATTCCCTTTTCTGGACCATTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGGCATAAAGATGATACTTCAATAAGATCTCACTGTAGATCTATTTCCAGAGGGCATATTATCAACCCCTTAGAATCTGCTATACCAAATTCAAGGAATAATTTTGATTCCAGAAACTTGGAAAATAAGGATTGTGGGGGACACCCCTACTCTAGGAGTCATGATCCACATGAAATCCCTAAGCTTGCAATGCAGAACCAATGGAGCAAGTTTGATCGCCCAGATTCATTTGATGCTTCTGATGAATACCACTCGCAAGAGCTATCCATGGCACTTTATCATAGAGAAGATTCGGCATCGAAGAGAAGTAACCTGAGTTATCAGGATCAAGGAGAGAAGGTTGAGTTTTCGGGACCCTTACTATCTCAAATGCACACAGTTGATGAGCTCCTAGAAAAAAATGAGCGCCACATTCGCCGTACAGTCCGAAGATCTTGGTTTCAAAGAGGCAAGAAGTATGGGATTTAA 2046 0.4541 MGCVSSKQAVSVTPAIDHSGVFRGNAGTVNSGRNLGDLDKKKSESVGLSRSEVGESARASSNGGCESLSFRLGNLQKYVEGEQVAAGWPAWLSAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARDLETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIVKLEGLITSKLSCSIYLVFEYMEHDITGLLSSPDIKFSESQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSSSGRRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYNSCLQETFKDLPPSSVNLLQTLLSVEPYKRGTASSALSSEYFKTKPYACEPSSLPTYPPSKEIDAKHREESRRKRIGGRARGTEARKPSRKPLGFNKLVPTEDLASQTQNSQRVNGRSVHILKEGNTNIVGEEPKPSSGKPEDASHTKNASQGDIPFSGPLQVSTSSGFAWAKRHKDDTSIRSHCRSISRGHIINPLESAIPNSRNNFDSRNLENKDCGGHPYSRSHDPHEIPKLAMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSASKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLEKNERHIRRTVRRSWFQRGKKYGI 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0955 681 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0955 681 FunFam probable serine/threonine-protein kinase At1g54610 98 193 - -
Dere03g0955 681 MobiDBLite consensus disorder prediction 405 514 - -
Dere03g0955 681 MobiDBLite consensus disorder prediction 414 444 - -
Dere03g0955 681 FunFam probable serine/threonine-protein kinase At1g54610 194 434 - -
Dere03g0955 681 MobiDBLite consensus disorder prediction 454 470 - -
Dere03g0955 681 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0955 681 MobiDBLite consensus disorder prediction 496 514 - -
Dere03g0955 681 SUPERFAMILY Protein kinase-like (PK-like) 105 400 IPR011009 -
Dere03g0955 681 Gene3D Transferase(Phosphotransferase) domain 1 194 434 - -
Dere03g0955 681 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0955 681 PANTHER CELL DIVISION PROTEIN KINASE 109 399 - -
Dere03g0955 681 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Dere03g0955 681 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Dere03g0955 681 MobiDBLite consensus disorder prediction 33 64 - -
Dere03g0955 681 CDD STKc_CDK9_like 111 395 - -
Dere03g0955 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0955 Dere-ChrDere03 14619032 14624394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0955 103 455 Core Cell Cycle Gene Families AT5G10270 47.425 1.04e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere03g0955 Pkinase 1.2e-68 CL0016