Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0951 ATGGCGGGGGAGGAATCGGCTCCGTCTTCTTCCACTGTGTTGAGCATGGACGGTCTTGACGATGTGGAGGACTACGATTTGGAATATGGACCAGGGGGTTTGACAAGGGAAACATTCCATCATGTTTTTGAACTTGTGCAGAATGGCAATGTGGCATTTCGGGATAATCGTATGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAGAATGATGATCCTGTTACACTCAGGAACAGAAGTGCAGCTTATATCAGGATTAGCCAATTTCTAAAGCACAGAGCTCCATCAGCTTCAGAATATAATCCATTGAGTGGGCTTGATCCTACAACACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATACGAAGTAATTCAGTAAAATCATACCTTCTAAAGGCCAATGCTCTTTTTCTATTGGAGAAATATCAAATGGCTAGGGATGTTATTCTTTCAGGCCTTCAAGCCGATCCATATAGTAATTCTCTCCGGGCTTCTCTTTCAAAATTGGAAAGAGCATCAGCTAGTTTGGCTAGGATGAGTACACATGGACAACCAGAGCGCACTGATGACTTTGATTGCACACTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGTTCATGTCTATTTCAGGCAATGGATCGTGGCAACAGGTGCCCATTATGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCTGTCAGTGTGACATTGAAAAACATTATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAATTTGACCAACTTTGGCTTAGATTTAATCCCTCTTTTTGTCATGGATGTTGTCATTCCGTGTCAAAAGTTTCCACTCCATATATTTGAACCTCGTTATAGATTGATGGTAAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATAATTGATTCTGCTACAGATTCCCTAGCTGAGTTTGCGTGTGAAGTGGAAATTACTGAGTGTGAGCCACTTCCAGATGGACGTTTTTATATAGAGATTGAAAGTCGCAGGAGGTTTCGCATCATCCGATCTTGGGATCAAGATGGCTATCGTGTTGCAGAGGTTGAATGGATTCAGGATATTATGCCGTCAGAAGGTACAAGAGAGAGAGAACAATTGCAGGAAATAACATATCATGCAGCGGAAAGTGCTCGATCATGGATAAGAAGAGCTAAAGAAGTAGCAGGACATGATCAAAGAAGACTCGAGAGACTCGTGAATGTTGAAGTCATGATGCCCCCGCTACAAGACCCCGAGCGCTTCAGTTTTTGGCTTGCTACCTTATCTAACCGGAGGCCTTCGGAAAAATTGGATCTTCTACGCATAAGAGATACCAAAGAGAGAATTAGACGTGGCTTGATATTTCTGCGAGCGGAGGAACAAGGCTGCAGAATCCAGTAA 1473 0.4243 MAGEESAPSSSTVLSMDGLDDVEDYDLEYGPGGLTRETFHHVFELVQNGNVAFRDNRMEEAINFYSRANSIKNDDPVTLRNRSAAYIRISQFLKHRAPSASEYNPLSGLDPTTHAELGLKDAEKLVNIRSNSVKSYLLKANALFLLEKYQMARDVILSGLQADPYSNSLRASLSKLERASASLARMSTHGQPERTDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQAMDRGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFPEEYAERKQENDNLTNFGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSATDSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPSEGTREREQLQEITYHAAESARSWIRRAKEVAGHDQRRLERLVNVEVMMPPLQDPERFSFWLATLSNRRPSEKLDLLRIRDTKERIRRGLIFLRAEEQGCRIQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0951 490 Pfam Zinc finger, C3HC4 type (RING finger) 200 237 - -
Dere03g0951 490 SUPERFAMILY RING/U-box 194 263 - -
Dere03g0951 490 CDD RING-HC_LONFs_rpt2 197 241 - -
Dere03g0951 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 279 IPR013083 -
Dere03g0951 490 Gene3D - 282 384 IPR046336 -
Dere03g0951 490 PANTHER RING FINGER PROTEIN 127 39 482 - -
Dere03g0951 490 SMART ring_2 200 237 IPR001841 -
Dere03g0951 490 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Dere03g0951 490 ProSiteProfiles Lon N-terminal domain profile. 281 482 IPR003111 -
Dere03g0951 490 Pfam ATP-dependent protease La (LON) substrate-binding domain 284 480 IPR003111 -
Dere03g0951 490 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Dere03g0951 490 Gene3D Tetratricopeptide repeat domain 36 190 IPR011990 GO:0005515
Dere03g0951 490 SMART lon_5 283 482 IPR003111 -
Dere03g0951 490 SUPERFAMILY TPR-like 42 173 IPR011990 GO:0005515
Dere03g0951 490 SUPERFAMILY PUA domain-like 284 480 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0951 Dere-ChrDere03 14551274 14559256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0951 188 241 C3H Transcription Factor Family AT1G74990 35.088 1.20e-09 55.1