Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0944 ATGGTATTGGAGGCGACGTTGACTCACCGTATTATGGAGACTGGAGAGAGTGAAAGAGTTGGGAGATTCAGTTTTGTACCGAAATTGATACTATCCGCCATTTCTGGAGCTCTCACGGGATGTTTTGCCATTGTCGGAGCCATCGCAGGAGCTATTGCTGGTGCTTTAGCCAGTAGGGCTTCTGAAAGTGGTTTTCTCCGTGGAGCTTCATTGGGTGCCATTGCTGGGGCTATAATATCTGTTGAGGTGCTAGAAGCTTCCCGTGCCTACTGGTGTTTGGAGCAAACTGGCACAAGGAGCACATCATCCATGGTTGGTAGACCTTTTGCTCTGGAGTGTCAATTTTCCTCGGCAGATTTCGTAGAGCAACTTGTACGTGGGAGGCTTGTAGAGGAACAATTTACACCAGCTATACTAACTGCTTACAGTTGGCAGGCTGGGTTTGCTAATATAGGCTATGGCGAGATTCATGAGGTTCATAACTTAGTTTCACCCCGAGGATTGACAGGGGATTTATTGAAGAAGTTACCACACCATGTGATCTTAAAGGACATGAAGACAGAGAATCTCTGCTGCACAATATGTTTGCAGGACATTGAAGTAGGAGATATTGCGAGGAGCTTACCTCGCTGTCACCATACTTTTCACTTGACATGCGTGGACAGATGGCTTGTCAATAATGATTCATGTCCTGTCTGCAGACAAGATGTATAG 714 0.4622 MVLEATLTHRIMETGESERVGRFSFVPKLILSAISGALTGCFAIVGAIAGAIAGALASRASESGFLRGASLGAIAGAIISVEVLEASRAYWCLEQTGTRSTSSMVGRPFALECQFSSADFVEQLVRGRLVEEQFTPAILTAYSWQAGFANIGYGEIHEVHNLVSPRGLTGDLLKKLPHHVILKDMKTENLCCTICLQDIEVGDIARSLPRCHHTFHLTCVDRWLVNNDSCPVCRQDV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0944 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 237 IPR013083 -
Dere03g0944 237 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 237 IPR044523 -
Dere03g0944 237 Pfam Ring finger domain 192 234 IPR001841 -
Dere03g0944 237 SUPERFAMILY RING/U-box 172 237 - -
Dere03g0944 237 ProSiteProfiles Zinc finger RING-type profile. 192 234 IPR001841 -
Dere03g0944 237 SMART ring_2 192 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0944 Dere-ChrDere03 14443570 14445815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0944 26 237 C3H Transcription Factor Family AT1G74410 52.582 5.87e-69 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0944 03 14443570 14445815 Dere03g0944 03 14443570 14445815 ECH