Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0939 ATGGAAGACGTTTCTGTGCTTTCTAAGGAAGACGATCACATGGATTTGCCTCCTGGGTTTCGGTTTCACCCTACAGATGAAGAGCTTATTACTCATTATCTGTACAAGAAGGTCACTGATATGAACTTCTCTGCCAGGGCCATTGGAGAGGTGGACTTGAATAGGTCTGAGCCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAGAAAGAGTGGTACTTCTTCTGTGTGAGAGACAGAAAATACCCCACTGGTTTGAGAACCAATAGAGCCACTGAAGCAGGGTACTGGAAGGCCACAGGGAAAGATAGAGAGATTTACAGAGGAAAATCGTTGGTGGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCACCAAAAGGAGAAAAAACCAACTGGGTCATGCACGAATACAGATTAGATGGTAAATTCTCTGTCCAAAACCTCCCCAAAACTGCAAAGAACGAGTGGGTTATTTGCAGGGTGTTTCAGAAGAATCCTGGTGGCAAGAAAACCCATATTTCTGGTATAATGAGGTTGGAATCCGTTGGAAATGAATTGGGTTCTTCTGGTTTACCGGCACTCACAGATTCTTCTCCTTCCATTGGCAAAACCGAACCTGTGATGACTGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATCGATGATCAAAGAAACCAACGAGGGATCTTTGATTCTTCAGGAAACTCCCTTTTGGGGATTCCTTCGAATTCTCAAAAAACTCTTCCAAGAATCCCCCTTTCTGGTTCGTTCTATTCTGCTCAACCCCTTCAAGCTCCTGCAAATTTGCCATTACCCGGATCTGTTTACACCATGCAAGACCAGACCATCCTCAAGGCGTTACTTGAAAACCACGGATCAAACTTGAGAAATGGTTTTAAATCAGAGAGGGAAAAAATGGTCAGTGTCTCACAAGAAACAGGTCTCACTTCTGATATGAATCCTGAAATCTCTTCTGTGATATCGAATTTCAACATGGGTAGGAGGGTCTTTGTGAATCAGCAAAACCCACCTGCTTGGTCTGCTGCACCAGTGGACCTCGATAGTCTGTGGAATTACTAA 1089 0.4426 MEDVSVLSKEDDHMDLPPGFRFHPTDEELITHYLYKKVTDMNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDREIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLDGKFSVQNLPKTAKNEWVICRVFQKNPGGKKTHISGIMRLESVGNELGSSGLPALTDSSPSIGKTEPVMTESAYVPCFSNPIDDQRNQRGIFDSSGNSLLGIPSNSQKTLPRIPLSGSFYSAQPLQAPANLPLPGSVYTMQDQTILKALLENHGSNLRNGFKSEREKMVSVSQETGLTSDMNPEISSVISNFNMGRRVFVNQQNPPAWSAAPVDLDSLWNY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0939 362 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Dere03g0939 362 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Dere03g0939 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 257 - -
Dere03g0939 362 FunFam NAC domain-containing protein 100-like 25 170 - -
Dere03g0939 362 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Dere03g0939 362 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0939 Dere-ChrDere03 14381510 14382774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0939 14 362 NAC Transcription Factor Family AT5G07680 59.714 1.20e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere03g0939 NAM 1.5e-39 No_clan