Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0932 ATGCAGGAAAGTAAAGACCCTGCAATTACGCTCTTCGGAAAGAAGATTCCGTTGCAGGGCGAAGGGGAGGATCCTACCATTTCCGGCGATGATTCTGCCTCACCGGAAGCGATTGACGTGGAGAAAGAAGGAGGACAAAAGAGACCAGAAGAGGAAGAGGAGGAAGCAGATAAGGAATCTGTATCTGGAAAAGTCACCGAGAGCCTTAAAGAGAAAGAGGCTGAACACCCTGAGGCAAGTTTGAACCCAAAAATACCTTCCATAGATGAAGAAACTGCAAAATCTTCGATGAATGATGATGGAACCAACTCGCAAGAGAAAGTCCTGAAGAAGCCAGATAAAGTGCTTCCGTGTCCTCGCTGCAAAAGTATGGACACAAAGTTCTGTTACTACAATAACTACAACATCAATCAGCCTCGTTATTTCTGCAAATCCTGTCAAAGATACTGGACAGCAGGTGGCACCATGAGGAACGTTCCGGTGGGTGCAGGACGACGAAAGAACAAGAACTCCTCCTCTCATTATCGCCACATCACCATTTCTGAGGCTCTTCAAGCAGCCAGAATCGATGCTCCTAATGTAACTAATGGAGAAGTCCTCAGCTTTGGATTAGATGCACCTATTTGTAATTCTATGGCTTCTGTCTTGAATCTTGCAGAGAACAACGTTGTTTCTAAAAGCACCCCAAATGGGTTTCATAATCATAGCTTTGAGGATCAGAAAAAGCCATCTTCCATGGAAGAAAGTGGGAAAAACACCCTTCAAGTCCCATGTCTTCCTGCTGTCCCTTGGCCTTACCCTCCAGCTTTTCCCCCCCTGCCATTCTATCATCCTGCAGCATTTTGGAATTATGGTGTGTTGGGAAATTGGAATGTTCCTTGGTATCCCTTAAATTCATCTTCTCCATCCTCAAAGTCTCCGAGCTCTGGTCCAAATTCTCCAACTTTGGGGAAGCACACGAGGGACGAGGACACGCTTGAGCCAGAGTATATGCAGAAAGAAGAACCATCAAAACAGAGAAATGGCACTGTTTTGGTGCCAAAAACGTTGAGAATTGATGACCCAAGTGAGGCTGCGAAGAGTTCAATATGGGCAACCTTAGGAATCAAGAACGAATCAGCGAGTGGAAGAGGCATGTTTGAGGCGTTCCGATCGAAGAAGGATGAGAAAAATCAGAAACATCTTGGGGTTGAAGCCTCTTCAGTGTTGAGGGCCAACCCGGCAGCCTTGTCTAGATCCTTCATCTTTCACGAGAACACATGA 1263 0.4592 MQESKDPAITLFGKKIPLQGEGEDPTISGDDSASPEAIDVEKEGGQKRPEEEEEEADKESVSGKVTESLKEKEAEHPEASLNPKIPSIDEETAKSSMNDDGTNSQEKVLKKPDKVLPCPRCKSMDTKFCYYNNYNINQPRYFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHITISEALQAARIDAPNVTNGEVLSFGLDAPICNSMASVLNLAENNVVSKSTPNGFHNHSFEDQKKPSSMEESGKNTLQVPCLPAVPWPYPPAFPPLPFYHPAAFWNYGVLGNWNVPWYPLNSSSPSSKSPSSGPNSPTLGKHTRDEDTLEPEYMQKEEPSKQRNGTVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGRGMFEAFRSKKDEKNQKHLGVEASSVLRANPAALSRSFIFHENT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0932 420 ProSiteProfiles Zinc finger Dof-type profile. 116 170 IPR003851 GO:0003677|GO:0006355
Dere03g0932 420 MobiDBLite consensus disorder prediction 317 336 - -
Dere03g0932 420 Pfam Dof domain, zinc finger 113 170 IPR003851 GO:0003677|GO:0006355
Dere03g0932 420 MobiDBLite consensus disorder prediction 1 111 - -
Dere03g0932 420 ProSitePatterns Zinc finger Dof-type signature. 118 154 IPR003851 GO:0003677|GO:0006355
Dere03g0932 420 MobiDBLite consensus disorder prediction 89 103 - -
Dere03g0932 420 MobiDBLite consensus disorder prediction 228 251 - -
Dere03g0932 420 MobiDBLite consensus disorder prediction 299 316 - -
Dere03g0932 420 PANTHER CYCLIC DOF FACTOR 2 1 420 IPR045174 GO:0003700|GO:0006355
Dere03g0932 420 MobiDBLite consensus disorder prediction 299 349 - -
Dere03g0932 420 MobiDBLite consensus disorder prediction 35 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0932 Dere-ChrDere03 14252726 14254826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0932 1 418 C2C2-Dof Transcription Factor Family AT3G47500 45.106 1.44e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere03g0932 zf-Dof 3.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1744 09 22366227 22369165 Dere03g0932 03 14252726 14254826 CCT
Dere03g0932 03 14252726 14254826 Dere14g0449 14 4640529 4643111 ECH
Dere03g0932 03 14252726 14254826 Dere03g0932 03 14252726 14254826 ECH