Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0902 ATGTCTAGCAGAAGAAGATCCACAGCTTCAAGACTCACGGAGAATGAGATTAATGAGCTTGTTTCAAGGTTACGAGCAGTGCTGCCACAGCTGAACCAAAGAACCAACTCAAGGGCATCGATATCGAGGATTGTGGAAGAATCTTGCAGTCACATCAAGAAGCTTCAGAAAGAGGTGGAAGAGCTTAGTGAGAGAATATCGAGGCTGATGGATTCTATGGATATCAATGATATTGACGAACAAAGTCTTCGAAATCTTTTGCAGCAGTAG 270 0.4296 MSSRRRSTASRLTENEINELVSRLRAVLPQLNQRTNSRASISRIVEESCSHIKKLQKEVEELSERISRLMDSMDINDIDEQSLRNLLQQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0902 89 Pfam Helix-loop-helix DNA-binding domain 15 56 IPR011598 GO:0046983
Dere03g0902 89 Gene3D - 4 88 IPR036638 GO:0046983
Dere03g0902 89 Coils Coil 45 72 - -
Dere03g0902 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Dere03g0902 89 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Dere03g0902 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 73 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0902 Dere-ChrDere03 13877489 13878064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0902 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 46.835 4.60e-17 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g0902 HLH 0.00015 No_clan