Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0894 ATGGAGTTTGCTTTGGGAAGATCTGGTCATGAAGGTCGAGTCAAGAAAGAGAAGAGGAGTGAATCTGCATCTAGTGGTGGTGGTGATGATGAAGGTCATCGTAAAGAAGAGATTGATGTTGAGGTGCCACCGATGGAGGATATTACTAGACCAAGTGCATCTTCAACCAAGAAGGAAGAGGCTGAGAAGCTTGACTCTGCTAAAGCTGAAATGGGAGAGGTGAGAGAAGAAAACCAAAGGTTGAAGCTGTGTTTGGACCGAGTTCTGAAGGATTATAGGACACTGCAAATGCAATTCCAAGGAATAGTTCAGAAAGAAACAAAAGAATCTAGTGCTGATCATAAAGAATCGTATCAGCATAATCGTCAAGCGATAATACCTGAGGAATCTGAGCTTGTTTCCCTAAGCCTTGGAAGAGTTCCGAGTAATATTCCAAGAAACAATGAGAAAAGCAAAGTCTTCAAATCATTACAGTTGAAGAATGAAGAATGTAAAGAGGACTTGGCTCTTGGATTAGACTGCAAATTTGAAACATCAAAATCATCAGGAAGCTTAAATGAAGCTAATGATTTGCCAAATATTAATCCAAGCTCAACCAACAGTTCTGAAGTGGCAAAGGAAGGAGAGACTAAAGCACTCAAAACAGCCAGAGATAATAATGGAGAAGACGAAGTTTCACAGCAGAATCACGCAAAGAAAGCTAGAGTTAGTGTGAAAATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAGATTGCCAAGGGAAATCCTTGTCCTAGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCGGTAAAAAAACAGGTACAAAGATGTGCTGAGGACATGTCCATTTTAATCATCACCTACGAGGGAATCCACAACCACCCTCTTCCTCTTTCTGCAACAGCCATGGCTTCCACTACTTCTGCAGCTGCTTCCATGCTTCTGTCTGGCTCATCAACTTCACGTCCATCAACAAGCTCCACTTCTGCTGATCTCCATGGCCTCAACTTCTACCTGTCAGACGGTTCCAATAAATCAAAGCAATTCTACGTCTCAAATCCTTCACTGTCATCATTATCACCTTCTCACCCAACAATCACTCTCGACCTCACCACCACCACAAACCCTACACTCTCTAGATTCACCTCCTCAAACTACAACCCTCCAAGATTATCATCATATTCGTACCCTCCTTCCACAAGTCTCAGCTTCAGTTCCCCCAACAATGATATTCTCAACAGGAACGTTTTCAGCTCCATGAATGTTGGGAGACCAACAATGGAGAATATCTTCAGGCTTCCTTATATGCAGAAGAACAATGTTATCAGTAACCCAACTCCTCCTCCTCAGCCTGCTCTACCGGATACCGTCGCCGCCGCAACGAAGGCCATCACGGCGGACCCGAAGTTTCAGTCAGCTTTGGCGGTGGCACTTAGTTCAATTATTGGCACAGGAAGTGGGATTGGAATTGGAACCGCCCAAGGGAATCATGTTGGAGAAAATTTGGCTCAGAAAATGAAATGGGGCGAGCTGTTTCCAGCATCTTCTTCTTTATGA 1569 0.4359 MEFALGRSGHEGRVKKEKRSESASSGGGDDEGHRKEEIDVEVPPMEDITRPSASSTKKEEAEKLDSAKAEMGEVREENQRLKLCLDRVLKDYRTLQMQFQGIVQKETKESSADHKESYQHNRQAIIPEESELVSLSLGRVPSNIPRNNEKSKVFKSLQLKNEECKEDLALGLDCKFETSKSSGSLNEANDLPNINPSSTNSSEVAKEGETKALKTARDNNGEDEVSQQNHAKKARVSVKMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVKKQVQRCAEDMSILIITYEGIHNHPLPLSATAMASTTSAAASMLLSGSSTSRPSTSSTSADLHGLNFYLSDGSNKSKQFYVSNPSLSSLSPSHPTITLDLTTTTNPTLSRFTSSNYNPPRLSSYSYPPSTSLSFSSPNNDILNRNVFSSMNVGRPTMENIFRLPYMQKNNVISNPTPPPQPALPDTVAAATKAITADPKFQSALAVALSSIIGTGSGIGIGTAQGNHVGENLAQKMKWGELFPASSSL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0894 522 Pfam WRKY DNA -binding domain 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere03g0894 522 MobiDBLite consensus disorder prediction 1 44 - -
Dere03g0894 522 MobiDBLite consensus disorder prediction 1 76 - -
Dere03g0894 522 ProSiteProfiles WRKY domain profile. 240 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere03g0894 522 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere03g0894 522 MobiDBLite consensus disorder prediction 207 230 - -
Dere03g0894 522 Gene3D WRKY domain 225 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere03g0894 522 MobiDBLite consensus disorder prediction 52 76 - -
Dere03g0894 522 SUPERFAMILY WRKY DNA-binding domain 239 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere03g0894 522 MobiDBLite consensus disorder prediction 180 206 - -
Dere03g0894 522 Coils Coil 57 84 - -
Dere03g0894 522 MobiDBLite consensus disorder prediction 180 236 - -
Dere03g0894 522 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 37 495 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0894 Dere-ChrDere03 13706763 13710595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0894 32 487 WRKY Transcription Factor Family AT1G18860 40.499 2.78e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere03g0894 WRKY 5.8e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0894 03 13706763 13710595 Dere14g0479 14 4948792 4952422 ECH
Dere03g0894 03 13706763 13710595 Dere03g0894 03 13706763 13710595 ECH