Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0883 ATGGCGGGTGGTAGGGTCTTTAGCGGTTCACGTAGAAATGCTTCCAATTTGGGTATTTTGCTTCCAAATCAACCCGGTCCTTGCACTTCTGAGCCTCTTGATGCCTTTTTTCTTTCTGGCTCTTCCTCTCCTTTCCTCGGTTCAAGATCCATGGTGAGCTTTGAAGATGTTCAAGGAGGGAAAGGGTGTAGCCGTTCGTTCTTTAGCGCTTTTGATCATGACGAAAATGGAGATGAAGACATGGATGAATACTTTCATCAACCTGAGAAGAAGAGGCGGCTCACTGCTGAGCAAGTGCGGTTTCTTGAGAAAAGCTTCGAGGTAGAGAACAAGCTTGAACCGGAGAGGAAAGTTCAACTAGCCAAGGACGTCGGCTTGCAGCCTCGGCAAGTTGCCATTTGGTTCCAGAACCGCCGTGCGCGGTGGAAGACAAAACAGCTGGAGAAGGATTATGAAACTCTGCAGGCTAGCTATGACAGTCTCAAAGCTGACTATGATAACCTTCTCAAGGAGAAAGATGAACTAAAAGCTGAGGTTGAAAGTCTCACAGAGAAGGTGCTTGTAAAAGAGAATCAAGGGGAAAACTACAAGCAGGATGAAACAAGGAAATCTGAAGAATCCCAGCAAAAGCAAAAGCCTTTATTTGATACAAGTTCTGAGGGTGAAGGTTCCAAAGTCTCTGTTGGGGCATGCAAACAGGAAGACATAAGCTCAGCCAAGAGTGACATATTTGATGCAGATAGCCCACATTACACTGATGGAGTTCACTCTGCACTGTTGGAGCCTGGGGATTCTTCATATGTATTTGAACCTGATCAGTCTGATCTATCTCAGGATGAGGAAGATAACTTGAGCAAGAGCCTCTTTCCTCCATACATATTTCCAAAGCTTGAAGACGTTGATTACTCCGACCCGCCTGAAAGTTCTTGTAGTTTTGGATTCCCTGTGGAAGATCATGCCTTTTGGTCCTGGTCTTATTAG 981 0.4546 MAGGRVFSGSRRNASNLGILLPNQPGPCTSEPLDAFFLSGSSSPFLGSRSMVSFEDVQGGKGCSRSFFSAFDHDENGDEDMDEYFHQPEKKRRLTAEQVRFLEKSFEVENKLEPERKVQLAKDVGLQPRQVAIWFQNRRARWKTKQLEKDYETLQASYDSLKADYDNLLKEKDELKAEVESLTEKVLVKENQGENYKQDETRKSEESQQKQKPLFDTSSEGEGSKVSVGACKQEDISSAKSDIFDADSPHYTDGVHSALLEPGDSSYVFEPDQSDLSQDEEDNLSKSLFPPYIFPKLEDVDYSDPPESSCSFGFPVEDHAFWSWSY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0883 326 MobiDBLite consensus disorder prediction 243 282 - -
Dere03g0883 326 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Dere03g0883 326 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Dere03g0883 326 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Dere03g0883 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 225 IPR045224 GO:0003700
Dere03g0883 326 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Dere03g0883 326 MobiDBLite consensus disorder prediction 190 210 - -
Dere03g0883 326 SMART HOX_1 88 149 IPR001356 GO:0003677
Dere03g0883 326 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Dere03g0883 326 CDD homeodomain 90 146 IPR001356 GO:0003677
Dere03g0883 326 Gene3D - 140 191 - -
Dere03g0883 326 FunFam Homeobox-leucine zipper protein HAT5 83 147 - -
Dere03g0883 326 Coils Coil 144 192 - -
Dere03g0883 326 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Dere03g0883 326 MobiDBLite consensus disorder prediction 190 230 - -
Dere03g0883 326 Gene3D - 93 139 - -
Dere03g0883 326 SUPERFAMILY Homeodomain-like 70 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0883 Dere-ChrDere03 13538032 13539676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0883 27 324 Homeobox Transcription Factor Family AT3G01470 39.145 3.45e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere03g0883 Homeodomain 2.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0883 03 13538032 13539676 Dere14g0486 14 5002331 5005696 ECH
Dere03g0883 03 13538032 13539676 Dere03g0883 03 13538032 13539676 ECH