Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0873 ATGGGAAATTGCAACGCTTGTGTGAAAGCAGAAGTCGTAGAAGAACCGTCGAACAACCACGCAAACGATAGGAAGAAGAAGAAGTCCAAGGATAGAAGGCCGAACCCGTTCGCGGAGGACGCTATTCACTCGCCGGCTCCGATCCGGGTCCTGAAGGACGTGATTCCATTGAGCCACCGAACCCGAATCAGCGACAAGTATATACTTGGACGCGAGCTGGGACGCGGGGAGTTCGGGATTACCTACCTCTGTACGGACAGAGAGACGAAGGAAGCACTGGCTTGCAAATCGATATCGAAACGGAAGCTGCGAACCGCGGTGGATATAGAGGACGTGAGGCGAGAGGTTGCTATAATGTCTACGCTTCCCGACCACCCAAACATCGTGAAGCTCAAGGCGACCTACGAGGACAATGAAAATGTACACCTCGTGATGGAGCTCTGTGAGGGCGGTGAGCTCTTTGACCGGATTGTGGCCAGAGGACATTACAGTGAGCGAGCCGCCGCAACCGTCGCTAGGACGATAGCAGAAGTTGTGAGGATGTGTCATGCCAACGGAGTTATGCATAGAGACCTCAAGCCTGAGAACTTCCTTTTTGCTAATAAGAAGGAGAATTCAGTCCTTAAGGCCATTGATTTTGGACTCTCTGTGTTTTTCAAGCCTGGAGAGAGATTTTCAGAGATCGTTGGAAGTCCTTACTATATGGCGCCGGAAGTTTTGAAAAGACACTACGGGCCGGAGGTTGACATCTGGAGCGCCGGCGTGATTCTTTATATATTATTATGTGGGGTTCCTCCGTTTTGGGCAGAGACCGAACAAGGTGTGGCCTTGGCAATTCTGAGGGGTGTGATTGATTTTAAGAGAGAACCTTGGCCTCAGATATCGGATAGTGCTAAGAGCCTAGTGCGGCAGATGTTGGAACCGGATCCTAAAAGGCGCCTGACAGCTCAACAGGTGCTTGAACATTCCTGGCTGCAAAATGCAAAGAAAGCTTCAAATGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTTTCCATGATGAATAGATTCAAAAAGAAAGCCCTTTGGGTAATTGCAGAACATTTATCTATTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAGAGATGGAAAAGTAACTTATGAGGAACTGAAGGCTGGGTTGCGAAAGGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTAATGGAAGTGGCTGATGTAGATGGGAATGGAGTGCTTGACTATGGAGAATTTGTAGCTGTGACAATTCACTTGCAAAGAATGGAGAATGACGAGCATTTCCGCAAAGCATTTATGTTTTTTGACAAAGATGAGAGTGGGTATATTGAGTTAGGTGAACTACGAGAAGCATTAGCAGATGAGTCAGGTGAAATAGAGGCTGATGTAGTGAATGACATCATGCGTGAAGTCGACACTGACAAGGATGGCCGCATAAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACTGACTGGAGAAAAGCTTCAAGGCAGTATTCAAGAGAGAGATTCAAAAGCCTAAGCCTAAATTTGATGAAGGATGGTTCACTTCAGCTTCATGATGGAATTAGTGGTCAAGCAGTAGTGGTTTGA 1650 0.4648 MGNCNACVKAEVVEEPSNNHANDRKKKKSKDRRPNPFAEDAIHSPAPIRVLKDVIPLSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDIEDVRREVAIMSTLPDHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAATVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRHYGPEVDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKRRLTAQQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSMMNRFKKKALWVIAEHLSIEEVEIIKDMFTLMDTDRDGKVTYEELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDESGYIELGELREALADESGEIEADVVNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGISGQAVVV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0873 549 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Dere03g0873 549 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Dere03g0873 549 SMART efh_1 372 400 IPR002048 GO:0005509
Dere03g0873 549 SMART efh_1 444 472 IPR002048 GO:0005509
Dere03g0873 549 SMART efh_1 480 508 IPR002048 GO:0005509
Dere03g0873 549 SMART efh_1 408 436 IPR002048 GO:0005509
Dere03g0873 549 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Dere03g0873 549 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Dere03g0873 549 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Dere03g0873 549 Pfam Protein kinase domain 69 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0873 549 FunFam calcium-dependent protein kinase 13 153 333 - -
Dere03g0873 549 CDD EFh 444 506 IPR002048 GO:0005509
Dere03g0873 549 Gene3D Phosphorylase Kinase; domain 1 68 152 - -
Dere03g0873 549 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0873 549 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 501 - -
Dere03g0873 549 Gene3D - 334 509 - -
Dere03g0873 549 Gene3D Transferase(Phosphotransferase) domain 1 153 333 - -
Dere03g0873 549 Pfam EF-hand domain pair 373 432 IPR002048 GO:0005509
Dere03g0873 549 Pfam EF-hand domain pair 443 506 IPR002048 GO:0005509
Dere03g0873 549 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Dere03g0873 549 FunFam Calcium-dependent protein kinase 1 69 152 - -
Dere03g0873 549 CDD STKc_CAMK 66 324 - -
Dere03g0873 549 SUPERFAMILY EF-hand 353 532 IPR011992 -
Dere03g0873 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Dere03g0873 549 MobiDBLite consensus disorder prediction 15 40 - -
Dere03g0873 549 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Dere03g0873 549 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0873 549 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Dere03g0873 549 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Dere03g0873 549 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Dere03g0873 549 FunFam Calcium-dependent protein kinase 7 334 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0873 Dere-ChrDere03 13430872 13435195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0873 1 549 EF-hand Containing Proteins AT1G18890 82.332 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere03g0873 Pkinase 5e-75 CL0016