Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0872 ATGGGGCATAAGAAGCGAAACCTTGCTCCGCGTTCTAAACAATCCGCGGCGGCGGTTCTTCCGGTGGCACAATCTGCCATCGGCGGAGCCGCCGATGGTCCCACTTCAGCCGAACCCGACTTGTGCATGAAGTCTTATCACGCTTTTCAAAACCAAAATAATACGATCGAATTGTGTCGTCCTCCATCTGAGGGTTCGGCTTACTCCACAATCAAGCTTGAATGCGAGCGGGCCCTCACAGCACTTCGGCGCGGTAACCACACCAAAGCACTGAGGCTTATGAAGGAATCATGCTCTAGACACGAGAGCTCGGTTTACTCGCCTTTAATTCACCGAGTTCAGGGTACCGTGTGTGTCAAAGTAGCGTCCATTATTGATGACCCTAGTTCGAAGCAACGACATTTGAAGAATGCGATTGAGTCGGCACGCAAAGCAGTTGAACTGTCCCCGAATTCTATTGAGTTTGCACATTTTTATGCCAATTTGCTATATGAGGCAGCAAATGATGCGAATGAGTTCGAGCAGGTGATAAAGGTGTGTGAAAGGGCACTCTCGATTGAAAACCCAACTGATCCTGCTAAAGAGAGCTTGCAGGATGAGAGCCAGCAGAAAATATCAACTGCGGAAGCCCGTATAGCACATGTGCAGAATGAGTTGCGGCAGCTAATACAGAAATCAAAAATTGCTTCTTTGTCGACTTGGATGAAAACTACTCTGGTTAATGGGGAGGAGAAATTTCGGTTGATTCCAATAAGGAGGGCTACAGAAGACCCAATGGAGGTGAGGTTAGTTCAAACTCGAAGGCCAAATGAGATCAAGAAGGTGACCAAGACACCAGAAGAGAGAAGAAAAGAAATTGAAGTTCGAGTGGCTGCAGCAAGGCTGTTGCAGCAAAAGTCAGAGTCACCCCAATCTCAGAATGAAGGAGATAGGGATGAAAGAACATTGGATTCATCTTTAGGATCTGGTCAGAAGATAGTTGATAAACGGAAGAATGGACATATGCGGAAAAATGGCTCTACAGCTGAAAGACGGGATTGGGTACATCCGTATTGGAATTCAATGAGTATTGATATGAAGAAGGACTTGCTTAGGATTAGGGTGTGTGATCTCAGGTCCCACTTTGCATCTTCAAAGGATACTTTGCTGAATGATGTTTTATCGGAAGCTTTGTCCTATGCCGAGGCCAATAAAACATGGAAATTCTGGCTTTGCTTCCATTGCAATGATAAGTATTCAGATTCAGAATCTCACATGCAGCATATTGTGCAGGAACACATGGGAAATCTCTTACCAAAAATGCAAAGACTTTTACCTCAAAATGTGGATAATGAGTGGATTGAGATGATTCTTAACTTTTCTTGGAAGCCTCTGGATGTCTCAGCTGCAGTTAAAATGCTTGAAAATCAGGCAAAATGTAAAGGCTGTACATTCCTCGGGGGTTCCCACTTTGGTCTTCATACCAGAGAATATGGTGGTTATTTAAAAGATGCAAGCGAATCTTATAAGGAGGATGAAAATTTGGGGCATAGTCATCTAAATTGTACAGCAGAAAGCAATAGCTATTGTCAACTTGCAGAAAATGATAGAAGAGAAGGTATCCAGGTCCAAGGACCTATAGCATTTCCTCTTGCTGGTAGTTGGCCAATTTCTGATGACTCTGAGCGTGCAAAAATCCTTGAGAAAATTCATGCAATATTTGAGATGCTTATTAGACACAAGTATCTTGCTGCCAGTCATCTTAACAAGGTCATACAGTTTACTATGGATGAGATACAGGGTCTTGCTGCTGGTTCTCAGCTTCTTAACCATGGTGTAGACCAAACACCAATGTGCATCTGCTTTCTTGGGACTTCCCAGCTTAGGAAAATCCTCAAATTTTTGCAGGAACTGTCACATGCTTGTGGTTTGGGTAGGTATGCTGAGAAAACTAATACTGCCATGGATGATTTATGCAATCCCAGTCAAGGTCCTGAGATAAAGGAGAATATTGTTCTCAACGGAGATGCATCATGCCTCCTTCTGGATGAGTGTTTACTGTCAACAGAACTCATGTCTACTAGTACTCAGGTTGCTGTCCTAGACCGCGTGGCTGCCCCAACTTCTGCTAATGGGGGTGCTTTTCTGTCCTGGATATTTTCAGGTTCCTCTAGTGGGGATCAATTGACATCTTGGATGCGTACAGAAGAAGATAAAAGGCATCAAGGAATGGAAATTGTTCAGATGCTTGAGAAGGAGTTTTATCATCTGCAAAGCCTTTGTGAAAAGAAGTGTGAGCGTTTAAGTTATGAAGAAGCTCTGCAGGCAGTGGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAAACTGTCATGGTATTTGTTCAGCGAAGCTATGAATCTATTTTAAGAAAGCGGAGAGAAGAGCTCTTTGAGATTGAGAATGATGTGATGTATGTTAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTCTGCAAGAAGCAGAAGCTCTGAATGCTAATCAGTTTGGCTATGAGGAACCATATGCTGGTGTGACCTATAAGTTATGCAACACAGAATCTGGTGAAGATGATGGATGGAGCATGAAGGACTCTGTGAATCAAATGGATAGCTGTATAGAAATTGCTATTCAGAAACTGAAAGAACACTTATCTTTGGAGCTTAGCAAAATTGATGCACGAATAATGAGAAATGTTACAGGGATGCAACAATTGGAGCTGAAGCTTGAGCCTGTTTCTGCTCATGATTATCAAGCAATAGTATTGCCTCTAGTAAAGTCATACCTAAGGGCACTTTTGGAAGATTTGGCTGAGAAAGATGCCAGAGAGAAGTCTGATGCTGCAAGAGAAGCATTTTTGGCTGAACTTGCTCTTGATTCAAAGAAGGTTGTTAAAGGGGGAAGTGATATTTCAAGACATCTGGAGAAGACAAAAGATAAGAAAAAGCATAAAGAGCACAGAAAAGCAAGAGATTTGAAGACTAGTGGTCAAGAGCAGCCCATGCTACGTGCTACAATTTCTGATTGCTATTCTGTTGCACCTGATGATGACGAAAAAGATTCTGAGGTTGTTTCTATGAATGGTGATGACATGAAACAACTGGATGAGGAATTTAGACGTAAAGTTGAGCTTGAAGAGGAGGAAAAGAAGCTTGAAGAAACTTTGGAGTTTCAACGACGGATAGAAAATGAGGCTAAACAGAAACAACTTGCCGAGCAACAGAAGAAATCCTCTTGCACATATTTAGAGAAAGTGGCAGACAAACTTGAAGATGCTCAGTTGAAGGCTGTTGCTTCTGTGGGTTCAGATGTACATGAACTTATGAGACCACCTATGCGGGAACAGTTGACAAAGGATAATGGATACCTAAGCAATCTGGATGGTGTGCTTAGTACAACAACAAATTGTTCAATAGTCCCAATCAATTCGTCAACTGATCCAAGTTCCCAAACGATTTATCACATGCATCAGTCAAAAGTTAAAGAAGCAAATCTGTCTAATGGAGGAATTCCAGAGAATGGTCTTCAGTTGCTTGATCGGCGTACAGGTAAAAAGGGTAGACGGCACAAGAATTCTTCCAGATTGGTTAATGGGAAGTTTGAAGTTGTCTCATTGGAAAAAGAGAATATTCAGGGTGCAAATACTGATAGTCGCTTAGGAGAGCAGAAATCTCTGGACAATCAAGAAGTTAACAAGGGAGACAATGGATCAAAGACGCTGAGGGAGTTGCAAGTGGAAGATGATGAGGAGGAAAGATTTCAAGCTGATCTTAAATTAGCTGTACGCCAAAGTCTTGGTACAATTTATACTCCCTAA 3819 0.4226 MGHKKRNLAPRSKQSAAAVLPVAQSAIGGAADGPTSAEPDLCMKSYHAFQNQNNTIELCRPPSEGSAYSTIKLECERALTALRRGNHTKALRLMKESCSRHESSVYSPLIHRVQGTVCVKVASIIDDPSSKQRHLKNAIESARKAVELSPNSIEFAHFYANLLYEAANDANEFEQVIKVCERALSIENPTDPAKESLQDESQQKISTAEARIAHVQNELRQLIQKSKIASLSTWMKTTLVNGEEKFRLIPIRRATEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSQNEGDRDERTLDSSLGSGQKIVDKRKNGHMRKNGSTAERRDWVHPYWNSMSIDMKKDLLRIRVCDLRSHFASSKDTLLNDVLSEALSYAEANKTWKFWLCFHCNDKYSDSESHMQHIVQEHMGNLLPKMQRLLPQNVDNEWIEMILNFSWKPLDVSAAVKMLENQAKCKGCTFLGGSHFGLHTREYGGYLKDASESYKEDENLGHSHLNCTAESNSYCQLAENDRREGIQVQGPIAFPLAGSWPISDDSERAKILEKIHAIFEMLIRHKYLAASHLNKVIQFTMDEIQGLAAGSQLLNHGVDQTPMCICFLGTSQLRKILKFLQELSHACGLGRYAEKTNTAMDDLCNPSQGPEIKENIVLNGDASCLLLDECLLSTELMSTSTQVAVLDRVAAPTSANGGAFLSWIFSGSSSGDQLTSWMRTEEDKRHQGMEIVQMLEKEFYHLQSLCEKKCERLSYEEALQAVEDLCLEEGKKRETVMVFVQRSYESILRKRREELFEIENDVMYVSNRFELDAISNVLQEAEALNANQFGYEEPYAGVTYKLCNTESGEDDGWSMKDSVNQMDSCIEIAIQKLKEHLSLELSKIDARIMRNVTGMQQLELKLEPVSAHDYQAIVLPLVKSYLRALLEDLAEKDAREKSDAAREAFLAELALDSKKVVKGGSDISRHLEKTKDKKKHKEHRKARDLKTSGQEQPMLRATISDCYSVAPDDDEKDSEVVSMNGDDMKQLDEEFRRKVELEEEEKKLEETLEFQRRIENEAKQKQLAEQQKKSSCTYLEKVADKLEDAQLKAVASVGSDVHELMRPPMREQLTKDNGYLSNLDGVLSTTTNCSIVPINSSTDPSSQTIYHMHQSKVKEANLSNGGIPENGLQLLDRRTGKKGRRHKNSSRLVNGKFEVVSLEKENIQGANTDSRLGEQKSLDNQEVNKGDNGSKTLRELQVEDDEEERFQADLKLAVRQSLGTIYTP 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0872 1272 Coils Coil 1035 1069 - -
Dere03g0872 1272 MobiDBLite consensus disorder prediction 327 341 - -
Dere03g0872 1272 Pfam Protein of unknown function (DUF627) 77 188 IPR006866 -
Dere03g0872 1272 Gene3D Tetratricopeptide repeat domain 57 225 IPR011990 GO:0005515
Dere03g0872 1272 Pfam Protein of unknown function (DUF629) 348 876 IPR006865 -
Dere03g0872 1272 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1266 - -
Dere03g0872 1272 MobiDBLite consensus disorder prediction 970 1005 - -
Dere03g0872 1272 MobiDBLite consensus disorder prediction 1213 1238 - -
Dere03g0872 1272 SUPERFAMILY TPR-like 74 191 IPR011990 GO:0005515
Dere03g0872 1272 Coils Coil 198 225 - -
Dere03g0872 1272 MobiDBLite consensus disorder prediction 295 341 - -
Dere03g0872 1272 ProSitePatterns Zinc finger C2H2 type domain signature. 405 426 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0872 Dere-ChrDere03 13408691 13415391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0872 71 1266 C2H2 Transcription Factor Family AT3G47890 55.629 0.0 1187