Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0871 ATGGGTGTTCCCCTGGAGGACGAAGCAACTGAGATTATGAATCGAGCTAATTTGCTTGGTACTGGTCTGAAGAATGAAGTGGGTGAATATAATTGCTTTCTCAATGTTATTATACAGTCTTTGTGGCATCTAAGACGTTTTCGAGAGGAATTTCTTCAGAGATCAAGGTCAGAGCATGATCATGTTGGTAATCCTTGTGTTGTCTGTGCATTGTATGAAATCTTTACTGCCATGGACATTGCATCAAAGGATTCCAGGAGAGAAGCAGTAGCACCTACTTTTCTAAGAATAGCTCTAAGCAACCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAAGTTCTGGGTGTGATTTTTGACTGCCTTCATCGATCATTTACACATGGTTCAAGTATTTCTGATACAGAATCAGCAGAAAGCAACTGCACAGGATCTTGGGATTGCTCAAATAGTTCTTGTATAGCACATTCACTCTTTGGAATGAACATTTTTGAGCGAATGAACTGCTACCACTGTGGTCTTGAGTCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCTAATGCCCTTCGTACAATGAAGGTTATGTGTGCTGAAAGCTCTTTTGATGAGCTTTTAAATCTTGTGGAGATGAATCATCAATTGGCTTGTGATCTGGAAGCTGATGGCTGTGGCAAGCTCAACTACATCCATTACTTTCTATCAAATCCACCTCATGTTTTTATGACAGTTATAGGTTGGCAAACTACATGTGAGAGTGCTGATGATATAACAGCAACTCTGGCAGCTGTGACCACCGAGATAGATATCAGTGTTCTTTATCGTGGTTTAGATCCAAAAAGCACCCATAGCTTGGTTTCAGTGGTTTGCTACTATGGGCAACATTATCATTGCTTTGCCTATAGCCATGACCATGAACAATGGGTTATGTATGATGATAAGACAGTTAAGGTAATTGGTGCATGGGTTGATGTTCTTACAATGTGTGAAAAGGGGCATCTTCAACCTCTGGTTCTTTTCTTTGAAGCTGTAAACTAG 1065 0.3991 MGVPLEDEATEIMNRANLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLQRSRSEHDHVGNPCVVCALYEIFTAMDIASKDSRREAVAPTFLRIALSNLYPDSNFFQEAQMNDASEVLGVIFDCLHRSFTHGSSISDTESAESNCTGSWDCSNSSCIAHSLFGMNIFERMNCYHCGLESRHMKYTSFFHNINANALRTMKVMCAESSFDELLNLVEMNHQLACDLEADGCGKLNYIHYFLSNPPHVFMTVIGWQTTCESADDITATLAAVTTEIDISVLYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWVMYDDKTVKVIGAWVDVLTMCEKGHLQPLVLFFEAVN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0871 354 Gene3D Cysteine proteinases 5 352 - -
Dere03g0871 354 Pfam Ubiquitin carboxyl-terminal hydrolase 22 330 IPR001394 GO:0004843|GO:0016579
Dere03g0871 354 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 21 353 IPR028889 -
Dere03g0871 354 PANTHER UBIQUITIN SPECIFIC PROTEINASE 14 353 - -
Dere03g0871 354 CDD Peptidase_C19 112 351 - -
Dere03g0871 354 SUPERFAMILY Cysteine proteinases 21 351 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0871 Dere-ChrDere03 13405165 13407510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0871 18 351 C2H2 Transcription Factor Family AT3G47890 75.749 0.0 568