Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0870 ATGACCCTAAAGGGTGGCACAACCCAGGCTTGTGCAGCTTGCAAATTCCAGAGAAGAAAGTGCACATCTGAATGCGTTCTTGCTCCATATTTCCCAGCAGACCAACCAAAGGTGTTTCAGAATGTCCACAAGCTATTTGGAGTGAGCAATATTGTAAAGATATTGAAAAATTTGGAGCCTGGCCAGAAGAAAATAGCCATGGATTCCATCATTTGCCAAGCAAATATTAGGGACAAATACCCTGTTCATGGCTGCTGGGAGGAAATTTGCAGGCTCCGTTACCAGATATGGCAGATGGAAGAGGAGCTTCATGCTGTTCATCAGAAGCTTGAGATGTGCAGGGAGCATTACCAACATCATCTTCATCATCTACCCGAGGATCATGTGACTTCTCAAATAGAGTTGGGTACGACACCTTGTGCGAATGCTCTCCAACTGTTCGATCATGTTCCTCACCCACATGATTACAACAATATAGTGGCTGCTGCTTTGCCCATGTCTCAGCAGCAACAACATTCTTTCTCAAGTAGCAACAATGAGGCTTACAACAATAACTCCCTTTACGTGGATTCCAAGAATAAATTGGATAATGTCACAAATCATTCGTGGGTTCAGCATCCATATGGAATCAACAATAGCAGTTCCGTGGCAGTGCAATCCCAATTGGTTGCCTCACAGCAGCCACTAATCATCCAGCAAGAAGATGTTGAAGATTATGATGAGATGCATCCTTTTTTTGATACTATTGATGATAGACATTCATACGTTTATTCCCAGGAGGCTTATGAGTCAAGTTCTGAAGAATCTCTGAAAGATACGAGAAAGTGCATTGAGCATGTTGCTGAGAATGAATTGAAGAGTGCTGCTTCACGCTTCTGTCTTACCAGTGTCAATTGA 897 0.4292 MTLKGGTTQACAACKFQRRKCTSECVLAPYFPADQPKVFQNVHKLFGVSNIVKILKNLEPGQKKIAMDSIICQANIRDKYPVHGCWEEICRLRYQIWQMEEELHAVHQKLEMCREHYQHHLHHLPEDHVTSQIELGTTPCANALQLFDHVPHPHDYNNIVAAALPMSQQQQHSFSSSNNEAYNNNSLYVDSKNKLDNVTNHSWVQHPYGINNSSSVAVQSQLVASQQPLIIQQEDVEDYDEMHPFFDTIDDRHSYVYSQEAYESSSEESLKDTRKCIEHVAENELKSAASRFCLTSVN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0870 298 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Dere03g0870 298 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Dere03g0870 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0870 Dere-ChrDere03 13401283 13402461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0870 1 261 AS2 family AT3G47870 37.417 3.69e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere03g0870 LOB 1.1e-34 No_clan