Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0854 ATGTTGCCACCTCGTTCCTGTCTCCGTCTCCATCTCCGTCTCGGGTATATATGTTCCGTCCCACACTGTCTCTCCCATATTAATGTTCTCTTCTCTCTCACTCGCCACCTGTGTCTCCTCACATTTCTCTCTGATACCTTCGTTGCTTCGCCGAAGCAACTTCCGATCGGAGCATGTCTCCCACTCTCTCCCATCTCATCCGACGGCAATGGTTTCTCCGCTGCCGCAGCCACCGGCGGTGAGATCATGCTGTTTGGAGTTAGAGTGGTGGTCGATTCCATGAGGAAGAGTGTGAGTATGAACAATCCCTCGCATTACGAGCTTACTCAGGACAACTTGAACAATAATAAAGAAGATGTTATCGCCGCCGGTTACGCCTCCGCCGACGAGGTCGTTGCTCGTAATTCCTGCAAGCATTGCGAGCTTCATGATTTCTCTGACACGGTTTATTATATGATTGTTTTTGGTGCTCCGAAATTGGTGAAAACGGAGGAAGAGCACAAGCTGTTCTTAGTCGGATTGCAGAAGGTAGGGAAAGGCGATTGGAGAGGGATCTCAAGGAACTATGTGAAAACAAGGACTCCAACACAGGTTGCGAGCCATGCTCAGAAGTACTTTCTTCGGAAAAGCAACCTTAATAGTCGACGTCGTAGATCCAGCTTATTTGACATTACCGCCCACACGGTCTCGGCAATTCCAATGGAAGAACAGGTCCAGCATCAAGATAATATGCCTCATTCACATTTTCTGCACCCTGCATCCTCTAAAACTAGTAACATCAATGGATTTTCAATGATGCCCATATATCCTATGCCCGTTGGTTCTGGAGTGATTTCATTTCCTGTCGGGAATACAGTGGAAAAGCTCACTCTGGGGCATGGAAATTCTGAACACAAGGGGCCAACGAGGTTCTTATTTATTTGGAAGTTTATGCCTGAAGTTATTGTAACTGAAAATAATTGGTACTTTCTGTTTATTTCTCATAACCTTGGATGTGGTCTACACATACGAGTGGATTCTGTAGCTCTTTGGGGTTTAACAGTTGGCGGTCTCGATTTCTATGACGTATCGATCTTGAGAATTGTGAACCACTCGAATGAGGTGATATTGGAAAACAAGAACAAAGGTGATGGTTACTAG 1140 0.4588 MLPPRSCLRLHLRLGYICSVPHCLSHINVLFSLTRHLCLLTFLSDTFVASPKQLPIGACLPLSPISSDGNGFSAAAATGGEIMLFGVRVVVDSMRKSVSMNNPSHYELTQDNLNNNKEDVIAAGYASADEVVARNSCKHCELHDFSDTVYYMIVFGAPKLVKTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRKSNLNSRRRRSSLFDITAHTVSAIPMEEQVQHQDNMPHSHFLHPASSKTSNINGFSMMPIYPMPVGSGVISFPVGNTVEKLTLGHGNSEHKGPTRFLFIWKFMPEVIVTENNWYFLFISHNLGCGLHIRVDSVALWGLTVGGLDFYDVSILRIVNHSNEVILENKNKGDGY 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0854 379 SMART sant 158 208 IPR001005 -
Dere03g0854 379 FunFam transcription factor MYB1R1 161 211 - -
Dere03g0854 379 PANTHER TRANSCRIPTION FACTOR KUA1 77 259 - -
Dere03g0854 379 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Dere03g0854 379 NCBIfam myb-like DNA-binding domain, SHAQKYF class 160 209 IPR006447 GO:0003677
Dere03g0854 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 210 IPR017930 -
Dere03g0854 379 Gene3D - 163 212 - -
Dere03g0854 379 SUPERFAMILY Homeodomain-like 163 211 IPR009057 -
Dere03g0854 379 CDD SANT 163 206 IPR001005 -
Dere03g0854 379 ProSiteProfiles SANT domain profile. 163 210 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0854 Dere-ChrDere03 13200432 13202940 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere03g0854 Myb_DNA-binding 4.2e-09 CL0123