Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0836 ATGGCTTCTTCTTCTGCGCTTCGAGATCCTTCTAGACACTATACTTATAACCGCAAGCAAAAATCTCTCGGCCTCTTGTGCACCAATTTCTTGAGCTTGTATAATCGAGACGGCGTTCACTTGATCGGGCTTGACGATGCGGCTGCGCGATTAGGGGTTGAGAGGCGGCGGATCTATGATATAGTTAATGTATTGGAAAGCGTAGGGGTGCTTGCACGAAAAGCCAAGAATCAATACACTTGGAAAGGATTTGGGGCAATTCCTGGGGCTTTGCAGGAGCTGAAGGAAGAGGGCTTGAGGGAAAACTGTGATGCTTTTGATGGCGGCCACGACAATCCGAAAGTGTCAGATGATGACGATGATGAAGAAACATTATCCAATCCCAGTACTGGAAGTCAGAATGACAAGTCTTATCCCAATTCTACGCTTCTCAAGTCTATGAAGAATGATAATCGAAGGGAAAAGTCTCTGGCACTTCTAACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATGGAACTGATTTCTCTCGATGAAGCCGCAAGGTTGTTGCTTGGAGATGCCCATAATTCGTCAATAATGAGAACGAAAGTTAGACGTCTATATGATATTGCAAATGTGCTGTCCTCCATGAACCTAATTGAGAAGACCCATACATCAGACACGAGAAAACCAGCTTTTAGATGGCTGGGTTTGAAGGGAAAAACGGAGGATGAGTCTATTCAAAATTCAAATCCCAGTGAATCCAGGAAAAGGATATTTGGTAATGATATCACTAACATCAGTTTTAAGAGGAATAAAGTGAATTTATTCTCTAATGGGGACTTAAATCAGAATCATAAGATGCTAAATAAAGAGGACAATGATAGTTGGCTCGGTCAGGCAGATAAAAGCAATTTAAATCAGGATTCAAAGCAGAGTTCAATGAGCTATCAGTTTGGTCCTTTCGCTCCAGTCTACGTGCCCAAGGCCAGTGCCTCTGAGAATGCGAAGCGGGTGCATGATTGGGATAGTCTAGCAGCTGCCTATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGAACTTTTCAGCCATTACATGGAAGCATGGAAATCATGGTACTCTGAAGTCGCTGGCAAGAGGCCAATTCAAATTTTATTATCGCACGAAATGCGTTTTGGCGGAGCATTCCTTCTTTCTTCAAATGTGCCAAGGGTTCCTTCCTTTCTTCAGTCTCTGCAACAATTCTCCTCTCTTCAATCTCTGAAGTTATTGCATCTGTTCCTTGCGATTTTGATGTTCCTTCATTCTCTGCAAAGCATTTCTGATGTTCTGAAGGCGTCAGCATTTGCCACGTGA 1341 0.4303 MASSSALRDPSRHYTYNRKQKSLGLLCTNFLSLYNRDGVHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFGAIPGALQELKEEGLRENCDAFDGGHDNPKVSDDDDDEETLSNPSTGSQNDKSYPNSTLLKSMKNDNRREKSLALLTQNFVKLFVCSNMELISLDEAARLLLGDAHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGLKGKTEDESIQNSNPSESRKRIFGNDITNISFKRNKVNLFSNGDLNQNHKMLNKEDNDSWLGQADKSNLNQDSKQSSMSYQFGPFAPVYVPKASASENAKRVHDWDSLAAAYRPQYQNQALRELFSHYMEAWKSWYSEVAGKRPIQILLSHEMRFGGAFLLSSNVPRVPSFLQSLQQFSSLQSLKLLHLFLAILMFLHSLQSISDVLKASAFAT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0836 446 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Dere03g0836 446 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Dere03g0836 446 MobiDBLite consensus disorder prediction 102 147 - -
Dere03g0836 446 MobiDBLite consensus disorder prediction 126 146 - -
Dere03g0836 446 FunFam E2F transcription factor-like E2FE 147 234 - -
Dere03g0836 446 FunFam E2F transcription factor 8 13 85 - -
Dere03g0836 446 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Dere03g0836 446 PANTHER TRANSCRIPTION FACTOR E2F 11 349 IPR015633 GO:0000978|GO:0006357
Dere03g0836 446 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Dere03g0836 446 Gene3D - 147 234 IPR036388 -
Dere03g0836 446 Gene3D - 13 86 IPR036388 -
Dere03g0836 446 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Dere03g0836 446 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0836 Dere-ChrDere03 12938245 12942916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0836 13 377 E2F-DP Transcription Factor Family AT3G48160 57.951 2.37e-135 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dere03g0836 E2F_TDP 2.3e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0836 03 12938245 12942916 Dere03g0836 03 12938245 12942916 ECH