Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0829 ATGGGTGGTGGCAATGGCAAGCGCAGGTGGAAAATCTCCTTCCATCGTTCTTCTTCTTCGTCTTCACCTCCTTCTGAATCGAAGCTCGAGCCAAAGCATCCCCCCAAGGAGTTACTATGTCCAATTTCTGGGTTTTTCATGTCCGACCCCGTTGTTGTCGCTTCCGGTCACACATTCGAACGGGTTTCTGTTCAAGTCTGCAGAGATTTGAACTTCTCCCCCAACCTCGAAGACGGGTCTCGACCCGATTTCTCCACCGTCATTCCCAATTTGGCCATCAAAACCACAATATCCAATTGGTGCAAGAGCTCCGGTGCGGAACACCCTCGCGCTCCTGATTATAGCTCTGTCGAGAGGGTTGTACGCGCATCAATGGCGTCCCAGCGGGAATCACCCGAATTAAGGGTTTCGGAGAGGGAATTGCTGAAGGCGGTGGCGGACAACCCGCCGGTGATATTCTCCCACGCCGCCACCGAGTTGGGTCCTCGAGTTAACCACTTCGACTCGACCTCGTCGGAGGAATCGGTGATCATCATGCCCAGTCCCGGCACGCCTTTGCCTCTAACCACTCGTCCAACCTGTTACTCTTCGTCGTCGTCTTCTTCCGTAACCGCCGAATCGGAAATTCAAAACCCTAACGGCCCAATTTCCGAGGAAGAGGACAAATTGGTCTCGAAGCTGAGGAGCAGCGAGATTTTCGAGCAAGAAGAGGCCGTCATATCACTTAGAAGCATCACGAGAAATGGAGAGAACACCAGAATTTCTCTCTGCACTCCCCGATTGCTGTCAGCCCTACGATCTTTGGTCACCTCGAGGTACGCCGTTGTGCAAGTAAACGCCGTCGCTTCGCTGGTCAACCTCTCGCTCGAGAAATCTAACAAGGTGAAGATTGTACGGTCGGGATTCGTCCCCCATCTCATCGACGTCTTGAAGGGGGGATCCGATGAGTCGCAGGAACACGCAGCAGGTGCGCTCTTCAGCTTAGCCTTAGACGACGACAACAAAATGGCCATCGGAGTTCTCGGCGCGTTGCAGCCGCTCATGCACGCGCTGAGGTCGGAGTCGGAGCGTACCCGACACGACTCGGCGCTGGCGTTGTACCACCTCACCTTGATCCAAAGTAATCGGGTCAAGCTCGTGAAACTCGGGGCGGTTCCGACCCTACTTGCGATGGTGAAATTGGGTAAATTGACGAGCCGGGTGTTGCTGATTCTGTGCAATCTAGCAGTGTGTACGGAGGGACAATCGGCGATGCTGGACGGAAATGCAGTGGAGTGCTTGGTGGGATTGTTAAGGGGGAACGAGTTGGACTCCGAGTCGACTCGGGAGAACTGTGTGGCGGCGTTTTATGCGCTTAGCCATGGGAGCTTGAGGTTCAAAGCGTTGGCGAAGGAAGCAAGGGCCATTGAGGTGTTGAAGGAGATTGAAGAGAGAGGCACAGAGAGGGCCAGAGAGAAGGCGAGGAGGATAGTGCAGATGATGAGAGCAGACGGAGACGAAGGGGAAGATGGAAACGGGTCGAATTTCGATGGGATTTTGGAATCTGGCGGGTCGAACCGGACTCGGTTCCGAATCGGGGGTGGGAAGAATATCAATATTGCGAACTCAACTGCATTTTAG 1620 0.5414 MGGGNGKRRWKISFHRSSSSSSPPSESKLEPKHPPKELLCPISGFFMSDPVVVASGHTFERVSVQVCRDLNFSPNLEDGSRPDFSTVIPNLAIKTTISNWCKSSGAEHPRAPDYSSVERVVRASMASQRESPELRVSERELLKAVADNPPVIFSHAATELGPRVNHFDSTSSEESVIIMPSPGTPLPLTTRPTCYSSSSSSSVTAESEIQNPNGPISEEEDKLVSKLRSSEIFEQEEAVISLRSITRNGENTRISLCTPRLLSALRSLVTSRYAVVQVNAVASLVNLSLEKSNKVKIVRSGFVPHLIDVLKGGSDESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLIQSNRVKLVKLGAVPTLLAMVKLGKLTSRVLLILCNLAVCTEGQSAMLDGNAVECLVGLLRGNELDSESTRENCVAAFYALSHGSLRFKALAKEARAIEVLKEIEERGTERAREKARRIVQMMRADGDEGEDGNGSNFDGILESGGSNRTRFRIGGGKNINIANSTAF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0829 539 SMART Ubox_2 37 100 IPR003613 GO:0004842|GO:0016567
Dere03g0829 539 MobiDBLite consensus disorder prediction 181 221 - -
Dere03g0829 539 ProSiteProfiles U-box domain profile. 33 107 IPR003613 GO:0004842|GO:0016567
Dere03g0829 539 Pfam Armadillo/beta-catenin-like repeat 293 329 IPR000225 GO:0005515
Dere03g0829 539 Pfam Armadillo/beta-catenin-like repeat 331 370 IPR000225 GO:0005515
Dere03g0829 539 Pfam U-box domain 35 103 IPR003613 GO:0004842|GO:0016567
Dere03g0829 539 SUPERFAMILY ARM repeat 222 494 IPR016024 -
Dere03g0829 539 MobiDBLite consensus disorder prediction 1 34 - -
Dere03g0829 539 FunFam RING-type E3 ubiquitin transferase 218 494 - -
Dere03g0829 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 107 IPR013083 -
Dere03g0829 539 SUPERFAMILY RING/U-box 24 109 - -
Dere03g0829 539 Gene3D - 217 496 IPR011989 -
Dere03g0829 539 MobiDBLite consensus disorder prediction 188 214 - -
Dere03g0829 539 PANTHER U BOX DOMAIN-CONTAINING 27 495 - -
Dere03g0829 539 SMART arm_5 290 330 IPR000225 GO:0005515
Dere03g0829 539 SMART arm_5 331 371 IPR000225 GO:0005515
Dere03g0829 539 SMART arm_5 411 454 IPR000225 GO:0005515
Dere03g0829 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 338 IPR000225 GO:0005515
Dere03g0829 539 FunFam RING-type E3 ubiquitin transferase 14 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0829 Dere-ChrDere03 12843035 12844654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0829 3 539 U-box Gene Family AT5G65200 58.169 0.0 597