Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g0820 | ATGAGGAAGCTCAGTGAATCACCACCGAACGAGAGCCAAAGAAATCCAAGACGTCTTCTTCTTCTTCCCAACTGGAAGATCGCTGTTTCGTTCATTCAATCCTCCAAGTTTGAACTTTTGGCTCTTGATTTGGATATGGCGACGTTCGCAGGCACTACCCAGAAGTGCAAAGCGTGTGAGAAAACAGTGTATTTGGTGGATCAGCTTACTGCTGACAATAAGGTTTACCACAAGTCTTGCTTCAGATGCCACCATTGCAAAGGTACCCTTAAGCTGAGTAATTATAATTCCTTTGAGGGCGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTCAAGATGACTGGCAGCTTGGAAAAAAGTTTTGAAGGTATTCCACGAACTGTTAGAGTTGACAGATCTGCTGATCTGGTCCAAACCAACAGTAGGGTTTCAAGTTTATTTGGTGGAACTCAAGAAAAGTGTGTTGCTTGCAACAAAACAGTTTACCCAATTGAAAAGGTGGCTGTTGATGGCAGTTCTTACCATAAGGCCTGTTTCAGGTGCACCCATGGAGGTTGTGTAATCAGTCCATCAAATTATGTGGCCCATGAACATCGCCTATACTGCAGGCACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAGCTTGACAAGCAGGAGAATGCCAATGGGGTGACTGAGAACACACCGACCGAGTAA | 711 | 0.443 | MRKLSESPPNESQRNPRRLLLLPNWKIAVSFIQSSKFELLALDLDMATFAGTTQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRTVRVDRSADLVQTNSRVSSLFGGTQEKCVACNKTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENANGVTENTPTE | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g0820 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 148 | 180 | - | - | |
| Dere03g0820 | 236 | PANTHER | OS06G0237300 PROTEIN | 43 | 132 | - | - | |
| Dere03g0820 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 82 | 122 | - | - | |
| Dere03g0820 | 236 | FunFam | LIM domain and actin-binding 1 | 149 | 219 | - | - | |
| Dere03g0820 | 236 | CDD | LIM2_SF3 | 155 | 215 | - | - | |
| Dere03g0820 | 236 | Gene3D | Cysteine Rich Protein | 50 | 120 | - | - | |
| Dere03g0820 | 236 | Gene3D | Cysteine Rich Protein | 150 | 219 | - | - | |
| Dere03g0820 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 181 | 219 | - | - | |
| Dere03g0820 | 236 | ProSitePatterns | LIM zinc-binding domain signature. | 56 | 90 | IPR001781 | - | |
| Dere03g0820 | 236 | ProSiteProfiles | LIM domain profile. | 153 | 213 | IPR001781 | - | |
| Dere03g0820 | 236 | ProSiteProfiles | LIM domain profile. | 54 | 114 | IPR001781 | - | |
| Dere03g0820 | 236 | Pfam | LIM domain | 155 | 210 | IPR001781 | - | |
| Dere03g0820 | 236 | Pfam | LIM domain | 56 | 110 | IPR001781 | - | |
| Dere03g0820 | 236 | CDD | LIM1_SF3 | 52 | 113 | - | - | |
| Dere03g0820 | 236 | SMART | lim_4 | 154 | 206 | IPR001781 | - | |
| Dere03g0820 | 236 | SMART | lim_4 | 55 | 107 | IPR001781 | - | |
| Dere03g0820 | 236 | FunFam | LIM domain and actin-binding 1 | 50 | 120 | - | - | |
| Dere03g0820 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 48 | 81 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere03g0820 | Dere-ChrDere03 | 12745558 | 12748552 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Dere03g0820 | LIM | 1.5e-10 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere03g0820 | 03 | 12745558 | 12748552 | Dere14g0536 | 14 | 5504903 | 5507043 | CCT | |
| Dere03g0820 | 03 | 12745558 | 12748552 | Dere03g0820 | 03 | 12745558 | 12748552 | ECH |