Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0809 ATGCCCAGCTTTCCTTTTAAATCCCAGCAAAAAGGTGATAGCTCGAAGTACTCATCCCCTGAACCGCCTTTCTCTTCATTCCAAGCTCCTTACTATGTTACTAGCAATGAGAAAGAAGAATCATCTCCTTCGTCATCAGTAAGCAGAATCAGCCCACTTATTCTATTAGTTATAATAGTTCTAGCAGTCATCTTCTTCGTCTATGGAATCGTCCATTTGGTTCTTTGGTGTCTGATGAGAACTTCATCATCCTCTTCACCTTCATACCAATCCAATAGATTCCCAGAATCCACGCGCTCGCGTGCTCTTCAAAGGCAGCTTCACCATCTCTTTCGCTTACATGATTCAGGACTAGAACAATCTCTCATAGATGCTCTTCCTGTTTTTTACTACGAGGATGTCTTGGGTTTAAAAGAACCGTTTGATTGTGCCGTGTGTCTCTGTGAATTCTCGGACCAGGACAAGCTGAGGTTGTTGCCAATGTGCTGCCATGCTTTTCACATCAATTGTATAGACACGTGGCTTCTCTCAAACTGTACATGTCCTCTTTGCAGAGCCACAATCACATCAAGCTCTGGTCTTTTCATGGAAAACCCATTATTCAATGTCGAGAGTTCATGGGCTTTGAATAGATTCAGAAGAGATGAAGAGAATGTCAATGGGTGTTCAGTTAGTCAGACAGGAGAAAGTGGGGAAGATCGAATTACTGAAAAAAGGGTTTTTTCAGTGAGACTGGGAAAATTCAGAAACATTAATGGAGTTGTAGGGGGTGGAGAAGAAGAGAGTAGCAGTTGTAATATGGATGCAAGGAGATGCTTCTCCATGGGTTCGTATCAGTATGTTGTGAGTGGTTCAAATCTGCAAGTGGTTTTGTCTGATATTTCAGAGAAAGATGATGTGGTTGGGAAGAGAATAGGAGATAGAATCAGAGGTGATAGCTTCTCTGTTTCGAAGATCTGGCTTTGGTCCAACAGGAGCAAGTTTCATAGTTGTTCTGATGGTGCTTTCCCTTGA 1014 0.4231 MPSFPFKSQQKGDSSKYSSPEPPFSSFQAPYYVTSNEKEESSPSSSVSRISPLILLVIIVLAVIFFVYGIVHLVLWCLMRTSSSSSPSYQSNRFPESTRSRALQRQLHHLFRLHDSGLEQSLIDALPVFYYEDVLGLKEPFDCAVCLCEFSDQDKLRLLPMCCHAFHINCIDTWLLSNCTCPLCRATITSSSGLFMENPLFNVESSWALNRFRRDEENVNGCSVSQTGESGEDRITEKRVFSVRLGKFRNINGVVGGGEEESSSCNMDARRCFSMGSYQYVVSGSNLQVVLSDISEKDDVVGKRIGDRIRGDSFSVSKIWLWSNRSKFHSCSDGAFP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0809 337 CDD RING-H2_EL5-like 142 185 - -
Dere03g0809 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 45 320 - -
Dere03g0809 337 SMART ring_2 143 184 IPR001841 -
Dere03g0809 337 Pfam Ring finger domain 142 185 IPR001841 -
Dere03g0809 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Dere03g0809 337 SUPERFAMILY RING/U-box 122 191 - -
Dere03g0809 337 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Dere03g0809 337 MobiDBLite consensus disorder prediction 1 24 - -
Dere03g0809 337 FunFam E3 ubiquitin-protein ligase ATL6 106 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0809 Dere-ChrDere03 12637312 12638325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0809 38 327 C3H Transcription Factor Family AT2G18650 40.719 2.02e-56 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0809 03 12637312 12638325 Dere03g0809 03 12637312 12638325 ECH