Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0802 ATGACTCCTAATTCCAACCACAATGATCGCCGAATTCTCTCCTCTCCCGCTGTATTCCCTTTCCAAGCCATCTCTCCCACCACCCTTCTCACCTCTTTGATCTCTCTCTCTCTCAACATCTGCAATTTCCAATCCACCTTCTTCCCTACCCAGCGACGGAATGCCAGAGAAACCATACGCCAGGTTGGTATCATCCTCATCTTCCTCGAGGAAATTCGTGACCGTGGGTTCGCTGTCCCCGAGGATTCCCTCCTTCTTTGCTTTGCGGAGCTCCACGTGAGTTTCCAGAAGATTCAGTTCTTGCTGGAGGATTGTACTCGCGAGGGTGCTCGGCTATGGATGCTGATGAAATCCCTATACGTTGCCTCGCAATTTCGGGTTCTCATTCGTGGTGTCGCCACTGCTCTTGACGTCTTGCCTCTGCATCGGATTGAGGTTTGTGGGGAAGTGAAGGAGTTGGTGGAATTAGTAGCCAAGCAAGCTCGGAGGGTGAAGTGCGAATCCGACCCAGATGACGAAGGGATGTCCAAACTAGTTCATTCAATTTTGCGTCAGCTCGAGAGGGGAATTGAACCTGACTTGAATTCTATGAAGCAAATCCTCGATTATTTAGAGATAAAGAGCTGGGCTGATTGTAACAAAGAGATCAACTTCTTAGAAGACGAAATCGATCTTGAGTGCTCTGAATGCGACGAGCGAGAGGTCCCATTTCTGAGTAGTTTGATCGGATTTTTGAGCTACTGCAGGGGACTGATATTCGAGACTCTGGATTTTCGTAACCCAACCGATCCCTCGGAAGGAAGGTGTAGTACAGAGATGATTAATTGCATAAACCCAGAGGATTTCCGATGTCCAATCTCGCTCGAGCTAATGACAGACCCAGTGACTACATCAACGGGCCAGACTTACGATCGAGCTGCGATTCAAAAATGGCTGAAATCTGGAAACAAAATATGTCCCAAAACAGGGGAGAAGCTGACCAACACAGAATTAGTCCCAAACACGACGCTCCGAAAGCTAATCCAACAATTCTGCGCCGACTATGGCGTCTCCCTGACCAAACTAAACAACCCAAGTCGCGACATAACGAAGACCATCGTCCCAGGAAGCCCGGCAGCAGCTCACGCAATGCAATTCCTCTCCTGGTTTCTTGCCCGGAGGCTCGTGTTTGGAACGATTGACCAGAAGAACAAAGCAGCCTACGAGATTCGTTTGCTTGCAAGATCCAACATTTTCAACCGGTCGTGTTTGATCCAAGTGGGAACAGTGTTCCCTTTACTTAATCTTCTATCAACGAATGATAAGTCCACCCAGGGGAACGCCATTGCTGCTCTGTTGAAGCTCTCAAAGCATAACAAAGGCAAGGAAGCTATAATGGATAATGGTGGTTTAAAGCCAATTCTCATGGTTCTCAAGAAAGGGTTAAGTCTAGAATCACGCCAAATTGCAGCTGCTACTATATTCTACCTTGATTCTGCAAAACAGTATAGGAAATTAATAGGAGAAAACCCAGATGCAATTCCTTCTCTAGTAGAACTAATCAAAGAAGGAACAACTACGGGAAAGAAGAACGCTGTGGTTGCGATTTTCGGGCTTCTCTTACTTCCTAAGAATCATCAAAGAGTACTTGAAGCTAACATTGTACCATTGCTTCTTGACATTCTAGCTTCCTCAGAGAAGGCTGATCTTTTGACAGATTCATTAGCAGTTCTTGCGGCATTAGCGGAGAACAGTGACGGAGCAGAAGCTATTTTAAAAACCTCGGCTTTGCCTTTATTTACTGGGATTTTGCGATCTACAACGAGGCACACAGAGAAAGAACACTGCGTTTCGATTCTGCTATCACTATGCGTTAATGGAGAAGATGTGGTTAGTGCTGTGGCAAAGGACGCCTCGGTGATGCCTTCGCTATACTCGCTTCTTACGGATGGGACTTGTCATGCGGGTAAGAAAGCACGCTTCCTCATCAGGATTTTACAGGAATTCAACGAGAAAGCAGCTTCTTCTTCTTCTGGATTGATGGGATCTACGGTTGCGCAAGAACGGTCCCTTCCCGTTCGGTGA 2064 0.468 MTPNSNHNDRRILSSPAVFPFQAISPTTLLTSLISLSLNICNFQSTFFPTQRRNARETIRQVGIILIFLEEIRDRGFAVPEDSLLLCFAELHVSFQKIQFLLEDCTREGARLWMLMKSLYVASQFRVLIRGVATALDVLPLHRIEVCGEVKELVELVAKQARRVKCESDPDDEGMSKLVHSILRQLERGIEPDLNSMKQILDYLEIKSWADCNKEINFLEDEIDLECSECDEREVPFLSSLIGFLSYCRGLIFETLDFRNPTDPSEGRCSTEMINCINPEDFRCPISLELMTDPVTTSTGQTYDRAAIQKWLKSGNKICPKTGEKLTNTELVPNTTLRKLIQQFCADYGVSLTKLNNPSRDITKTIVPGSPAAAHAMQFLSWFLARRLVFGTIDQKNKAAYEIRLLARSNIFNRSCLIQVGTVFPLLNLLSTNDKSTQGNAIAALLKLSKHNKGKEAIMDNGGLKPILMVLKKGLSLESRQIAAATIFYLDSAKQYRKLIGENPDAIPSLVELIKEGTTTGKKNAVVAIFGLLLLPKNHQRVLEANIVPLLLDILASSEKADLLTDSLAVLAALAENSDGAEAILKTSALPLFTGILRSTTRHTEKEHCVSILLSLCVNGEDVVSAVAKDASVMPSLYSLLTDGTCHAGKKARFLIRILQEFNEKAASSSSGLMGSTVAQERSLPVR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0802 687 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Dere03g0802 687 FunFam RING-type E3 ubiquitin transferase 358 670 - -
Dere03g0802 687 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Dere03g0802 687 SMART arm_5 451 492 IPR000225 GO:0005515
Dere03g0802 687 SMART arm_5 577 618 IPR000225 GO:0005515
Dere03g0802 687 SMART arm_5 535 576 IPR000225 GO:0005515
Dere03g0802 687 SMART arm_5 409 450 IPR000225 GO:0005515
Dere03g0802 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Dere03g0802 687 CDD RING-Ubox_PUB 279 331 IPR045210 -
Dere03g0802 687 PANTHER U BOX DOMAIN-CONTAINING 79 659 - -
Dere03g0802 687 Gene3D - 369 668 IPR011989 -
Dere03g0802 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 589 IPR000225 GO:0005515
Dere03g0802 687 SUPERFAMILY RING/U-box 279 351 - -
Dere03g0802 687 Pfam U-box domain 279 346 IPR003613 GO:0004842|GO:0016567
Dere03g0802 687 SUPERFAMILY ARM repeat 393 659 IPR016024 -
Dere03g0802 687 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Dere03g0802 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0802 Dere-ChrDere03 12567170 12569233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0802 1 665 U-box Gene Family AT1G60190 41.124 1.58e-168 497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0802 03 12567170 12569233 Dere03g0802 03 12567170 12569233 ECH