Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0799 ATGAAGAAAACAAGCAGCGACTCCTCCTCAAAGGTGGATCGCAAAACCGTAGAAAGAAATCGCAGAATTCATATGAAAGCTCTCTGCTTCAAGCTCGCTTCTCTTATTCCTTCCCACTACTTAAAAAACACCAAGGACATGATATCGCAGCAGGACCAGTTGGACATGGCGGCGAGCTATATAAGGAACCTGAGGGAGAAATTAGAGAAGCTGAAGGGGAAGAAGGAGGAAGCCATAAGGTTAAAGGAAACAAACAGTAACAGTAATGGAATGGAGAACATGTTGATGGGGTCGAATCTGCCACTGCTTGAGCTGAGAGACTTGGGTTCGAGCATCGAAGTGATGCTGATCAGTGGGTTGAACAGGAACTTCATGTTATATGAAGTAATCAGTGTGCTGGAAGAGGAAGGAGCAGAAGTTGTGAGTGCAAGCTTTTCCACTGTGGGTGATAAGATATTCCACACTGTTCATGCCCAGGTGAAAATATCAAGAGTGGGTGTGGAAACTACAAGGGTGTATCAGAGGCTTTACGAGTTGATCGCACCACTAAAAAGCTGGGAGTATTTTTAA 570 0.4456 MKKTSSDSSSKVDRKTVERNRRIHMKALCFKLASLIPSHYLKNTKDMISQQDQLDMAASYIRNLREKLEKLKGKKEEAIRLKETNSNSNGMENMLMGSNLPLLELRDLGSSIEVMLISGLNRNFMLYEVISVLEEEGAEVVSASFSTVGDKIFHTVHAQVKISRVGVETTRVYQRLYELIAPLKSWEYF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0799 189 Gene3D - 1 93 IPR036638 GO:0046983
Dere03g0799 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 76 IPR036638 GO:0046983
Dere03g0799 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Dere03g0799 189 Coils Coil 54 84 - -
Dere03g0799 189 FunFam Transcription factor bHLH162 1 93 - -
Dere03g0799 189 SMART finulus 15 70 IPR011598 GO:0046983
Dere03g0799 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 165 - -
Dere03g0799 189 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0799 Dere-ChrDere03 12541105 12541993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0799 4 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.595 4.25e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g0799 HLH 7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0799 03 12541105 12541993 Dere03g0799 03 12541105 12541993 ECH