Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0796 ATGGCTATCAGAGGCGTGGATTATAAGTGGTTGGTCTCAATTATGTACGATGGGTTTTTCTTATCGATGCTCGCCACCAGCACAGTTATTGTTTCAATCAACTGGAACCGGTACCATTCTTGCAAATACCCGATGCATATATGGATTGTGGTTGACTACACTACTGTGTTTTTTTTCCGGCTGCTGATGTTCGTTGATAATGGGCTTGCTGCTGGAATGGGGAGACAAGAAGGACATATATTGGAACTTCTGGAGGATAGAGATTTTGGGTGGCAGCAAAGGTATGCTCGTTTCTGTGGAAGAGTAGTAATCCTTTCAATCCTTGCTTTGCTTCTCTATCCATTTCTCTGGGCTTGGACTATAATTGGTGCCCTTTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAAAAGGGTCAGAAATGGGGCTTCCTCATTTGGTTACTTTTCAGCTTCTGTGGACTCCTTAGTATTGCTTGCATGTCCCTGGGGAAGTGGTTGACACGAAGGCAAGCACATCTGATACGTGCCCAACAGGGTATTCCTTTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTACCTGATTGGGCATTTGAAGCAGCACGCCAAGAAACAAGAGGCATGGGCCAAGATGCTGCTGCTTATCAACCTGGAATTTACCTAACCCTGGCTCAGAGAGAAGCGGTTGAAGCATTAATTCAAGAACTCCCAAAGTTCACTTTAAAAGCTGTTCCAACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTGCGTAGGGAATGAGGTCCGTGGCCTGCCTTGCGCTCATAATTTTCACGTTGAATGCATTGATGAGTGGCTACGATTGAATGTGAAATGTCCTCGATGCCGTTGTTCAGTATTTCCGGATCTTGACCTTAGTGCTCTGTCTAATCTCCGTGCTGATTTAGAGGGATCCACTGCTAGTGTTGTAACTACAACCAGATATGTGAGAGGTCAGCCTTCCAGTCAGAGTTATCTGTTGAGGTTACAGGGACTTCTCTGCCCAGTGCGTGCAGAAATTGCAAGACCAGGTGGTGACAGGAACGTTTTGGGTGATGCTCAGAATGCTGTTGTACCTGTGGTGACTCAAAATGCATCAATTGGAAGTCAGGCCCATTCAGTTGAATGCATGCCTGTCCGTCTTTCCCCTACATGA 1185 0.4608 MAIRGVDYKWLVSIMYDGFFLSMLATSTVIVSINWNRYHSCKYPMHIWIVVDYTTVFFFRLLMFVDNGLAAGMGRQEGHILELLEDRDFGWQQRYARFCGRVVILSILALLLYPFLWAWTIIGALWFSSAKNCLPEKGQKWGFLIWLLFSFCGLLSIACMSLGKWLTRRQAHLIRAQQGIPLSEYGVLVDMIRVPDWAFEAARQETRGMGQDAAAYQPGIYLTLAQREAVEALIQELPKFTLKAVPTDCSECPICLEEFCVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPDLDLSALSNLRADLEGSTASVVTTTRYVRGQPSSQSYLLRLQGLLCPVRAEIARPGGDRNVLGDAQNAVVPVVTQNASIGSQAHSVECMPVRLSPT 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0796 394 Pfam Ring finger domain 251 293 IPR001841 -
Dere03g0796 394 ProSiteProfiles Zinc finger RING-type profile. 252 293 IPR001841 -
Dere03g0796 394 FunFam E3 ubiquitin-protein ligase SIS3 220 298 - -
Dere03g0796 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 298 IPR013083 -
Dere03g0796 394 SUPERFAMILY RING/U-box 233 301 - -
Dere03g0796 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 373 IPR044793 GO:0004842|GO:0010182
Dere03g0796 394 SMART ring_2 252 292 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0796 Dere-ChrDere03 12491408 12495631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0796 63 376 C3H Transcription Factor Family AT3G47990 67.192 2.70e-145 412