Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0744 ATGGACACTCGGACACAACTCATTGGCTTCGATATTGGCCTCATTGATGAAAACTTTCCTTCTCCTCATACGAAAACTTCACTTTCGAGACCACTCTCTCTTCTTTACCCGGTGTGTGAGCTTCATTTCTTCCTGAGGAAAAGCTCTGAGAAGCCATGCCGGAATCAAAGTCATCTGTCACTGGGAAGAGCGATTCCTCTTCGGATTCGTATGAAAAATAACAAGAGGGATTATTCCACTGCAATATTAGAACGTAAGAAGTCTCCTAACCGTCTTGTTGTTGATGAGGCCATTAATGATGACAATTCTGTGGTATCATTGCATCCTGCTACAATGGAAAAGCTTCAGTTTTTTCGAGGTGACACTGTTCTAATAAAGGGAAAGAAGCGACGGGACACAGTTTGCATTGTTCTTGCTGATGAACAGTGTGAAGAATCAAAAGTTAGGATGAATAAAGTTGTTCGGGCCAATCTTAGAGTACGACTGGGGGATGTGGTATCTGTTCATCAGTGTCCTGATGTGAAATATGGGAAGCGGGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTTACTGGCAATTTGTTTGATGCATATCTAAAGCCATATTTTCTGGAGTCTTACCGACCTGTGAGAAAAGGTGATCTCTTCCTTGTTAGAGGTGGGATGCGAAGTGTTGAATTCAAAGTTATAGAGACAGATCCTGGTGAATATTGTGTCGTGGCACCAGATACTGAAATTTTCTGTGATGGAGAACCTGTCAAACGTGAAGATGAAGAGAGATTAAACGAAGTTGGCTATGATGATGTAGGTGGTGTTAGGAAACAAATGGCTCAAATCCGTGAGCTAGTAGAGCTTCCTCTTAGACACCCACAGCTCTTCAAATCAATTGGTGTTAAGCCTCCAAAAGGAATCTTGCTTTATGGGCCACCTGGTTCTGGAAAGACTCTGATTGCAAGAGCAGTAGCTAATGAAACAGGTGCATTCTTCTTTTTGATTAATGGACCAGAAATAATGTCAAAGCTGGCCGGTGAGAGTGAAAGCAACCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATTCCCCTTCTATCATTTTCATTGATGAATTAGATTCAATTGCTCCCAAGAGAGAAAAGACACATGGGGAAGTGGAGAGGAGAATTGTCTCACAACTTTTGACTCTAATGGATGGCCTCAAGGCCCGATCACATGTTATTGTTATTGGAGCCACCAATAGGCCGAATAGCATTGATCCTGCTCTAAGAAGATTTGGCAGATTTGATCGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGATTGGAGGTTCTTAGAATTCACACAAAAAATATGAAACTTGCTGATGATGTAGATCTTGAAAGAGTTGCCAGAGATACCCACGGTTATGTTGGAGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCGCTACAGTGTATACGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACGATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACAAATGAACACTTCCAAACTGCTTTGGGTGCTTCAAATCCATCAGCCTTGCGTGAAACAGTTGTGGAGGTTCCTAATGTTTCCTGGGACGATATTGGGGGCTTGGAGAATGTCAAAAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAGCATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCAAAAGGTGTTCTCTTTTATGGTCCTCCGGGCTGTGGTAAAACCCTACTTGCAAAAGCAATTGCTAATGAATGTCAAGCCAACTTTATAAGTGTAAAAGGACCAGAGCTACTAACAATGTGGTTTGGTGAAAGCGAGGCAAATGTGCGAGAGATATTCGATAAGGCCCGGCAATCAGCTCCATGTGTTCTTTTCTTTGATGAACTTGACTCTATTGCAACCCAGCGTGGCAGTTCTGTAGGAGATGCTGGTGGTGCTGCAGATAGGGTTTTGAACCAACTATTAACAGAAATGGATGGAATGACAGCTAAGAAAACAGTTTTCATCATTGGTGCAACAAATAGGCCTGACATTATAGACCCTGCATTGCTCAGGCCTGGACGTCTGGACCAACTGATATACATCCCATTGCCAGATGAGAATTCACGTCTACAAATCTTTAAAGCATGTTTGAGGAAGTCACCAATCTCAAAGGATGTTGACCTAGCAGCTCTTGCCCGATTTACTCATGGATTCAGCGGTGCAGACATTACAGAAATTTGTCAACGAGCCTGCAAATATGCCATCAGAGAAGATATTGAGAAGGGTATTGAGAAGGAGAGAAGAAAGAAAGAGAACCCTGAAGCTATGGAAGAGGATGACATTGATGAGGTCCCTGAGATAAAGCCAGCCCATTTTGAGGAGTCAATGAAGTTTGCTCGCCGAAGCGTCAGTGATGCTGATATCAGAAAGTACCAACTCTTTGCTCAGACCTTGCAGCAGTCGCGTGGATTTGGATCAGAGTTTCGGTTTGCAGATCGAACTGAGAATACTGCAACTGGAGCTTCAGACCCTTTCTCTTCTGCTACTGCCGCGGGGGATGATGATGATCTGTACAGTTAG 2607 0.4342 MDTRTQLIGFDIGLIDENFPSPHTKTSLSRPLSLLYPVCELHFFLRKSSEKPCRNQSHLSLGRAIPLRIRMKNNKRDYSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQFFRGDTVLIKGKKRRDTVCIVLADEQCEESKVRMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCDGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKARSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLADDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDENSRLQIFKACLRKSPISKDVDLAALARFTHGFSGADITEICQRACKYAIREDIEKGIEKERRKKENPEAMEEDDIDEVPEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTENTATGASDPFSSATAAGDDDDLYS 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0744 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 527 IPR027417 -
Dere03g0744 868 ProSitePatterns AAA-protein family signature. 406 424 IPR003960 GO:0005524|GO:0016887
Dere03g0744 868 Pfam ATPase family associated with various cellular activities (AAA) 306 435 IPR003959 GO:0005524|GO:0016887
Dere03g0744 868 Pfam ATPase family associated with various cellular activities (AAA) 579 712 IPR003959 GO:0005524|GO:0016887
Dere03g0744 868 SMART CDC48_N_2 91 174 IPR003338 -
Dere03g0744 868 FunFam Cell division control 48 174 270 - -
Dere03g0744 868 MobiDBLite consensus disorder prediction 844 868 - -
Dere03g0744 868 ProSitePatterns AAA-protein family signature. 682 700 IPR003960 GO:0005524|GO:0016887
Dere03g0744 868 SMART CDC48_2_2 191 257 IPR004201 -
Dere03g0744 868 CDD RecA-like_CDC48_r2-like 550 710 - -
Dere03g0744 868 Gene3D - 174 270 - -
Dere03g0744 868 FunFam Transitional endoplasmic reticulum ATPase 69 173 - -
Dere03g0744 868 Pfam Cell division protein 48 (CDC48), domain 2 193 256 IPR004201 -
Dere03g0744 868 Gene3D - 437 528 - -
Dere03g0744 868 Pfam Cell division protein 48 (CDC48), N-terminal domain 91 172 IPR003338 -
Dere03g0744 868 SMART AAA_5 302 438 IPR003593 GO:0016887
Dere03g0744 868 SMART AAA_5 575 714 IPR003593 GO:0016887
Dere03g0744 868 Gene3D - 529 712 IPR027417 -
Dere03g0744 868 SUPERFAMILY Cdc48 domain 2-like 173 265 IPR029067 -
Dere03g0744 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 825 IPR027417 -
Dere03g0744 868 PANTHER AAA-FAMILY ATPASE 505 830 - -
Dere03g0744 868 FunFam Transitional endoplasmic reticulum ATPase 529 712 - -
Dere03g0744 868 FunFam Transitional endoplasmic reticulum ATPase 267 435 - -
Dere03g0744 868 CDD RecA-like_CDC48_r1-like 270 435 - -
Dere03g0744 868 Gene3D - 716 824 - -
Dere03g0744 868 SUPERFAMILY ADC-like 87 171 IPR009010 -
Dere03g0744 868 Pfam AAA+ lid domain 458 500 IPR041569 -
Dere03g0744 868 Pfam AAA+ lid domain 734 775 IPR041569 -
Dere03g0744 868 Gene3D - 271 435 IPR027417 -
Dere03g0744 868 Gene3D - 69 173 - -
Dere03g0744 868 FunFam Cell division control 48 437 528 - -
Dere03g0744 868 NCBIfam CDC48 family AAA ATPase 92 828 IPR005938 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0744 Dere-ChrDere03 11901133 11905787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0744 571 770 Calmodulin-binding Proteins AT3G56690 41.872 5.93e-40 157