Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0727 ATGGCATCATCATCATCCAGCTCTTACAATTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGAAAATGCATGCCAGGTTGCATCTTCGCCCCTTACTTCCCACCCGAAGAGCCTCAGAAATTCGCCAACGTCCACAAAATATTCGGTGCCAGTAACGTCACTAAGCTCCTCAACGAACTCCTCCCTCACCAGAGAGAAGACGCCGTCAACTCCCTCGCCTACGAAGCCGAGGCTCGCGTGAGGGACCCAGTTTACGGCTGCGTGGGGGCCATCACTTTCCTCCAGAGACAGGTCCAGCGGCTGCAGAAGGAGCTTGACGCCGCTAACGCTGATCTGCTTCGTTTTGCCTGCAACGACATGGCGTCGCCTTCTGGATTGACGACGAATTCAGTTCAACCACCTATGCCTCAAAGGCAAAGGTCCATGGAGTTTGGTGGTGCTGCTGGTGGGTATTACAGGCAATCTTCTAGCAGTTATTCTCTTCCTTATTCTCTTCCATGGACTGATTCTTCCTCGGAGGACATCAATGAAGGAGGAGGAGGAGGAGGTAATTTGTGA 558 0.5215 MASSSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVQRLQKELDAANADLLRFACNDMASPSGLTTNSVQPPMPQRQRSMEFGGAAGGYYRQSSSSYSLPYSLPWTDSSSEDINEGGGGGGNL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0727 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 134 - -
Dere03g0727 185 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Dere03g0727 185 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Dere03g0727 185 Coils Coil 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0727 Dere-ChrDere03 11645383 11645940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0727 3 139 AS2 family AT5G63090 79.286 5.98e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere03g0727 LOB 3.4e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0727 03 11645383 11645940 Dere14g0619 14 6502528 6503163 CCT
Dere03g0727 03 11645383 11645940 Dere14g0619 14 6502528 6503163 ECH
Dere03g0727 03 11645383 11645940 Dere03g0727 03 11645383 11645940 ECH