Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0716 ATGAACCCTTACGACAACAGATATACGGACTCAACATCTTATCGCGACCGTAGGAGTGATTTAGTTGGATCTATACCGCCGATGGTGCCCCCAATGATTGGCGGTGCCGGTTCGAGCTACGGCCGCGGAGGTCCAGCTCCTTATGGTCCTCCTACGGTTGGTTATAACATGGGTGCAAGAGGAGCTGGGAGTGCTTTTGGAACGGCACCTGTTGCCCCAGATTATAATAATGCGTTGCCGCCGTTTATGCCGCCTCCTGGAGGTTTTGACGTAGGTCGAGGTGGTGGAAGCGGCCAAAGGGGGTTCGGGAGTAGACTAGGCAATGGTCATGTTGGTGATAGAAAAGATAACATAGGTCGTCGCGGCGGTGGAAGAGATCGTGGTACTAGTTCTATTGGTGGTCGTAACGGTGGTAGATTTGGTGGGACTCACGGATATAAGACTTCGGGGAGAGGAGGGTCTGGAGGTAGAGGTTTTGGTGGAAGCGCTGGGTGTGGCAATGGCCGGGGCCGTGGCCGTGGTGGTGGTGGCAGAGGAGGAAGACATGGTGGGTCTTCCAAAGATGACTTGGACAATATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTCCCTTTTGAGAAGAATTTTTACATTGAAAGCCCATCGGTGCGGGCAATGTCTGATCATGAGCTTATGGTTTACCGTGCCAGTAGAGAGATCACAGTCCAAGGGCATGACGTTCCAAAACCAATTCGGAAGTTTCAAGATGCAAATTTTCCTGACTACTGCCTCGAGGTGATTGCTAGATTGGGTTTTATTGAGCCTACACCGATTCAAGCTCAGGGTTGGCCGATGGCTCTGAAGGGTAGAGACTTAATTGGCATTGCTGAGACTGGCTCGGGGAAAACACTCGCATATCTGCTTCCTGCATTAGTGCATGTCAGTGCGCAACCTCGATTGGTACAAGGTGAAGGTCCCATTGTCTTAATTCTGGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAACTGTAAAATTTGGTTCACGAGCAAGTGTCAGAAGTACTTGCATCTATGGTGGTGCACCAAAAGGGCCTCAAATTCGTGATCTTAAAAGAGGTGTTGAGATTGTTATTGCTACACCTGGTCGCCTAATAGATATGTTGGAAGCTCAGCACACAAATCTGCAAAGAGTGACTTACCTTGTGTTGGATGAAGCTGATCGAATGCTGGACATGGGCTTTGAACCTCAGATACGGAAAATTGTAGGGCAGATTCGACCTGATAGGCAGACATTGTATTGGAGTGCAACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGTAACCCATATAAGGTAATTATTGGATCACCAGATCTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTGACAGAAGTGGAGAAATACAATAGGTTGATCAGACTGCTCAAGGAAGTGATGGATGGGAGTCGAATTCTGATATTTATGGAGACAAAAAAGGGTTGTGACCAAGTTACAAGACAATTGAGAATAGATGGCTGGCCTGCTTTATCCATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTCTTAGCTGAGTTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCCCGGGGTCTTGATGTGAAGGACATAAAATGTGTGATCAATTATGATTTTCCTTCGAGCCTGGAAGATTATGTCCACAGAATTGGTCGGACTGGTCGTGCCGGGGCTAAAGGAACTGCCTTCACCTTTTTCACACATGCAAATGCCAAGTTTGCCAGGGATTTGATCAAGATCTTGCAAGATGCTGGCCAGGTTGTGAGTCCTGCTCTATCTGCCTTGGCTCGCTCAGCTGGTTCTGGTCATTTTGGATCTGGGGGAAACTTCCGCTCTAGGGGACGAGGAGGTTATGGCAATCGGGGTCAAACATCAGGATCCAATTCTGTTCCTCTTGGTTCAAATAAGCCTTGGTAG 2004 0.4765 MNPYDNRYTDSTSYRDRRSDLVGSIPPMVPPMIGGAGSSYGRGGPAPYGPPTVGYNMGARGAGSAFGTAPVAPDYNNALPPFMPPPGGFDVGRGGGSGQRGFGSRLGNGHVGDRKDNIGRRGGGRDRGTSSIGGRNGGRFGGTHGYKTSGRGGSGGRGFGGSAGCGNGRGRGRGGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVRAMSDHELMVYRASREITVQGHDVPKPIRKFQDANFPDYCLEVIARLGFIEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLVQGEGPIVLILAPTRELAVQIQEETVKFGSRASVRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVVTEVEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQLRIDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANAKFARDLIKILQDAGQVVSPALSALARSAGSGHFGSGGNFRSRGRGGYGNRGQTSGSNSVPLGSNKPW 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0716 667 CDD SF2_C_DEAD 465 595 - -
Dere03g0716 667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 452 IPR014001 -
Dere03g0716 667 MobiDBLite consensus disorder prediction 1 27 - -
Dere03g0716 667 MobiDBLite consensus disorder prediction 109 123 - -
Dere03g0716 667 Pfam Helicase conserved C-terminal domain 476 586 IPR001650 -
Dere03g0716 667 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 398 406 IPR000629 -
Dere03g0716 667 Gene3D - 458 628 IPR027417 -
Dere03g0716 667 CDD DEADc_DDX5_DDX17 258 452 - -
Dere03g0716 667 Gene3D - 219 457 IPR027417 -
Dere03g0716 667 SMART ultradead3 265 468 IPR014001 -
Dere03g0716 667 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 223 625 - -
Dere03g0716 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 606 IPR027417 -
Dere03g0716 667 FunFam probable ATP-dependent RNA helicase DDX17 208 455 - -
Dere03g0716 667 MobiDBLite consensus disorder prediction 635 667 - -
Dere03g0716 667 MobiDBLite consensus disorder prediction 89 192 - -
Dere03g0716 667 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 246 274 IPR014014 GO:0003724
Dere03g0716 667 MobiDBLite consensus disorder prediction 647 667 - -
Dere03g0716 667 FunFam ATP-dependent RNA helicase RhlB 456 629 - -
Dere03g0716 667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 625 IPR001650 -
Dere03g0716 667 SMART helicmild6 505 586 IPR001650 -
Dere03g0716 667 Pfam DEAD/DEAH box helicase 270 441 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0716 Dere-ChrDere03 11464561 11468547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0716 243 606 Eukaryotic Initiation Factors Gene Family AT3G19760 35.989 3.72e-69 229