Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0702 ATGCTCAGCAAAGTAATCCTGTTTGAGTTAGCATGTCCCTCTCGAATGAGCTCAAGCTCTTCCACCTTCTTCTCTAACCACAAATTGACAACACCCCCAACCCATCGATCCTCTTCCTTCATCAACCCTTCCATAATTCTTCACCTTATTCCTGCTTCTTCCTCCACCGACAACTTTATTTGTCATCGCTCTTTCACTATTCGAGTTGCTTGCGGTAAGTTCGAGTGGAAGAAACCACATGTGAATATTGGCACAATAGGGCATGTCAACCATGGAAAAACCACTCTCACAGCTACTTTTACCATCGCTTTAGTGGCATTAGGCAATAGTAGCCCCGAAAAGTACGACGAAATTGATGCCGCCCCAGAAGAGCGAGCTCAGGGAATCACCATTAATATTGCTACAGTTAAGTACGAGATCGAGAATCGTCATTATGCTCATGTTAATTGTCCTGGCCACGCTGATTATGTCAAGAACCTGATCACCGGAGCTGCCCAAATAGACGGCACGATACTTCAAGACCAGGTCGATGAGGAGGAGCTTCTTCAGCTTGTGGAGTTGGAGGTTCTTGAGTTACTAACGTCCTATGAATTCCTTGGGGATGATGTCCCCATTGTTCTTGGTTCTGCTCTGCTAGCTTTTGAAGCATTGATGGCAAATCCTGTGATTAAAAGTGGAGATAACCAATGGGTGGATAAAATTTACGAACTTATGGACTGTGTAGATAGCTACATACCAGTTCCCCAGCGTCAAACTGATCTCCCCTTCTTTCTTGCCATTGAAGACGTGTTTTCCATTACCGATCGTGGGACTGTGGCCACAGGGCATGTTGAAAGAGGTACAATTAAGCCTGGAACCATAACCCTGTATACCAAGTTTGTTGGAATTGTGCATGTCCTAAAGAAAGAAGTTAGAAGGCATTCTCCATTCTTCGTTGGTTATAGGCCACAATTCTCCATGAGAACTACTGATGTGACTGGCAAAGTGGCCTCAATTATAAATGACAAAGATGAAGAGTCGAACATGGTTATGCCTGGAGATCGTGTTAAGATAGTTGTTGAATTCATAATGCTAGTGGCTTGTGAGCAAGGAATAAGGTTTGCTATTAGAGAAGGAGGGAAGACTATTGGAGCTGGTGTTATCCAATCTATTGTTGAGTAA 1161 0.4376 MLSKVILFELACPSRMSSSSSTFFSNHKLTTPPTHRSSSFINPSIILHLIPASSSTDNFICHRSFTIRVACGKFEWKKPHVNIGTIGHVNHGKTTLTATFTIALVALGNSSPEKYDEIDAAPEERAQGITINIATVKYEIENRHYAHVNCPGHADYVKNLITGAAQIDGTILQDQVDEEELLQLVELEVLELLTSYEFLGDDVPIVLGSALLAFEALMANPVIKSGDNQWVDKIYELMDCVDSYIPVPQRQTDLPFFLAIEDVFSITDRGTVATGHVERGTIKPGTITLYTKFVGIVHVLKKEVRRHSPFFVGYRPQFSMRTTDVTGKVASIINDKDEESNMVMPGDRVKIVVEFIMLVACEQGIRFAIREGGKTIGAGVIQSIVE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0702 386 PANTHER ELONGATION FACTOR TU-RELATED 174 285 - -
Dere03g0702 386 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 249 IPR000795 GO:0003924|GO:0005525
Dere03g0702 386 Gene3D - 70 172 IPR027417 -
Dere03g0702 386 CDD EFTU_III 288 381 - -
Dere03g0702 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 264 IPR027417 -
Dere03g0702 386 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 287 385 IPR009001 -
Dere03g0702 386 PRINTS GTP-binding elongation factor signature 162 173 IPR000795 GO:0003924|GO:0005525
Dere03g0702 386 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Dere03g0702 386 PRINTS GTP-binding elongation factor signature 126 134 IPR000795 GO:0003924|GO:0005525
Dere03g0702 386 PRINTS GTP-binding elongation factor signature 146 156 IPR000795 GO:0003924|GO:0005525
Dere03g0702 386 Pfam Elongation factor Tu GTP binding domain 78 172 IPR000795 GO:0003924|GO:0005525
Dere03g0702 386 Gene3D Translation factors 251 289 - -
Dere03g0702 386 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 119 134 IPR031157 -
Dere03g0702 386 FunFam Elongation factor Tu 325 385 - -
Dere03g0702 386 Gene3D Translation factors 290 386 - -
Dere03g0702 386 Pfam Elongation factor Tu C-terminal domain 287 384 IPR004160 -
Dere03g0702 386 Gene3D - 173 248 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0702 Dere-ChrDere03 11327151 11328729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0702 77 290 Eukaryotic Initiation Factors Gene Family AT5G60390 27.941 5.10e-20 89.4