Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0693 ATGAAAGACAAATCTGGTCAACAAGACAAGGATACACAAGAGGGATCTGGGTTGAAGATAGCTGGGTCTGATGGGGAGATAACAGCAGGATATTTATTAAAAAGAAGTGGCAAAACTAATGGTTGGAACAGACGATGGCTTTGTTTTGAACGAGAAGACTGGAAAGCTTGGTTACACCAAAAAATAAGAAGAGAGACACTTCCGAGGAGTCATTACACTAGAAGGCCTGCAGATCCTGAAGAGGAGCTCAGATGGACGTCTCAAGAAGTTCGTGGTTATGTAGAAGCTGTTCTAAATAGCCTTGCAGCTAATGTCCCAAAGGCTGTTGTTCTTTGCCAAGTGGAGAAAGCCAAAGAAGACATGCTTAACCAGTTGTACAGTTCCATCAGTGCCCAAAGCTCGGTAAAAATTGAAGAGCTGCTCCAGGAGGACCATAATGTAAAGCGTAAAAGGGAGCATATACAGAAACAGTCCTCCATTCTATCAAAGCTGACTAGACTGCTTAGTGTCCATGATAATAGAGCGGCTGCAGCATCTGATTGGTCTGATGAAGGGCACGCAGCAGAAAGCAACTCAGGTATCGAACATCATCAGGATTATGTTCTATCTGACTACCTATATTACAGTTCCTTGGTTATGCATTTTATTGGATTTGCACACAGGTTCCTTCACAGTGATGTGGAGATAATTGTCCAGATGGTGTTGAAGTTGCAGGACTGGGAGGATGGTACCAAAAAAAATGTCTCTGGCCATGTCTCTGAAACGAAGCTAGCGATGAACGAGCTGAGCATGGCGCTCCGACACTGCCGAGAGAAGATTATCAGAATAGAAAGTGACGACCCCTGCGAGGTCAAGCACAGCACTCCTCCCACCCATCCTAGCAGTGTGAACGAGAATGGCAACGTTTCGATGCAGCCTTTCGCTTACCAACCTTTTGATCATCAACTGGCTTCAGTGCTTCCTTTGAGTTCTTTACTGCCCTCTTCCCCTTGTTTGCCTTCATGTCAAGGAACATCTACCCAGGTTTGGAATGAACAGCGTAAGTCAATCCTACAGGATGTTATTTCAAATTTTCTTCTGCCATTTATGGAGAAGGAAACACGACAATTGTTAACTGCTAAGGCAAAAAAAAAAAACTGGTTATTAATGGGGTACGGGAAGGAATTATGGAACAGAGTCTCTGTGGCACCATGTCAATACAGGAATAATGCTACTGCACAAGAGAAGGGTGCTGAATCCAAAGTCATGACTTCTTGTTGGGGAACTGGAAAGCCCGGTACCACATTTGTGATGTTGGACTCTAAAAGGGAATTGGCTGATGTGATGCATGCGGGGTCACTTACTCTGCGATCACAAAATATAAATGATCAACAGCGCAGGAAAAACGATCAACGACGTGTTCTTAAGTTCCTGAGAAATCATCAACCAGACGTAATTGTTATAGGAGCTGCTAACGCATCCTGTATACGGTTGAGAGATGACGTTAATGAGATTATTTCAATGATGTTGGAGGAAAATCTTCAAGATGTCAGTCAAGAGATGAAAGGAATAACTGCAGTTTTAGGGGATGAAAGCCTGCCTCGCCTATACGAAGATTCAGAAATTTCTGTGCACCAGCTTCACAGACAACATGGCATTGTGAGGAGGGCAGTGGCTCTTGGACGTTACCTTCTCAACCCATTAGCAATGCTACTTGAGAATTCTAATGTAGAAGAAAGTATGCTACCAAACACATTGCCTACAAAGGTGGGAGATGATAGGTCTGTTCCATATTTAGAGGCAGAGTCTGACCAGCATTCTGAACCATTGAATGTTAATCGTGCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCCCCCGAAGCACAAAGCAAGCAAATAAGGAGCTGTGCGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGGCATCAAGGGTGAGCTTTGTGGATCCAGTAAAACATGGCAGGTTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGAGATATTCCATGGGATGAGTTCTGTGGTGCTGTGAGGAAAATTTTCATCTACACAGCAGGGGAGGTGGATGTATACAAGAAAGCTGGAGGTAATTACTTGCGGTTCGCTGTAATTCCAGTTTCCTCAATTATTGGGGTGTCTCTCTCTTCGCAGCGTGGCACTAAATGGAAGTTGGTTATATTTGAATCGAGAACTGGAAGATATTGA 2298 0.4382 MKDKSGQQDKDTQEGSGLKIAGSDGEITAGYLLKRSGKTNGWNRRWLCFEREDWKAWLHQKIRRETLPRSHYTRRPADPEEELRWTSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSVKIEELLQEDHNVKRKREHIQKQSSILSKLTRLLSVHDNRAAAASDWSDEGHAAESNSGIEHHQDYVLSDYLYYSSLVMHFIGFAHRFLHSDVEIIVQMVLKLQDWEDGTKKNVSGHVSETKLAMNELSMALRHCREKIIRIESDDPCEVKHSTPPTHPSSVNENGNVSMQPFAYQPFDHQLASVLPLSSLLPSSPCLPSCQGTSTQVWNEQRKSILQDVISNFLLPFMEKETRQLLTAKAKKKNWLLMGYGKELWNRVSVAPCQYRNNATAQEKGAESKVMTSCWGTGKPGTTFVMLDSKRELADVMHAGSLTLRSQNINDQQRRKNDQRRVLKFLRNHQPDVIVIGAANASCIRLRDDVNEIISMMLEENLQDVSQEMKGITAVLGDESLPRLYEDSEISVHQLHRQHGIVRRAVALGRYLLNPLAMLLENSNVEESMLPNTLPTKVGDDRSVPYLEAESDQHSEPLNVNRADVPSVSCDAEKSCLQSPPEAQSKQIRSCAKVHMQGMAVGRAVDLTRFDGYEDLLKKLEQMFGIKGELCGSSKTWQVVYTDNEDDVMMVGDIPWDEFCGAVRKIFIYTAGEVDVYKKAGGNYLRFAVIPVSSIIGVSLSSQRGTKWKLVIFESRTGRY 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0693 765 Coils Coil 137 157 - -
Dere03g0693 765 SMART GED_2 78 170 IPR003130 GO:0003924|GO:0005525
Dere03g0693 765 SUPERFAMILY Ribonuclease H-like 415 565 IPR012337 -
Dere03g0693 765 Pfam AUX/IAA family 631 714 IPR033389 -
Dere03g0693 765 Coils Coil 454 474 - -
Dere03g0693 765 Pfam Holliday-junction resolvase-like of SPT6 430 561 IPR028231 -
Dere03g0693 765 Gene3D - 629 722 - -
Dere03g0693 765 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g0693 765 Pfam Dynamin GTPase effector domain 82 163 IPR003130 GO:0003924|GO:0005525
Dere03g0693 765 Gene3D - 409 574 IPR037027 GO:0006139
Dere03g0693 765 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 338 572 IPR017072 GO:0032968
Dere03g0693 765 SMART rnase_8s 413 531 IPR006641 GO:0006139
Dere03g0693 765 Gene3D Dynamin, middle domain 48 151 - -
Dere03g0693 765 ProSiteProfiles PB1 domain profile. 634 716 IPR000270 GO:0005515
Dere03g0693 765 ProSiteProfiles GED domain profile. 83 176 IPR020850 -
Dere03g0693 765 SUPERFAMILY CAD & PB1 domains 636 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0693 Dere-ChrDere03 11233597 11240899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0693 564 719 B3 DNA Binding Superfamily AT1G59750 64.744 2.16e-58 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere03g0693 YqgF 5.2e-12 CL0580