Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0680 ATGGTTACTTTATCTAACTATAGTATACAGTCTACGCCACTTGACACCACAATCCTTCAATACAAGATGCTCTTGCTGACACGTGGACGGAGAGGTTATCTCATACCAGTTTTCTTTGCTTCTCTTCTTATCTCTTTACCACCGATTGTTTGGCTTGGAATCATGGAGATGGAGCGCGTCTTTGAGTTTCCTCATACTCACATGGATCGGCGTCCAAGGAAGCGGGCGCGTTTGGGCTGGGACATCCCTGAGGCCCCAAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGAAATTTTCCAAGCTATGCACCTTCAAGGGGACCCTCAGAGCATACCACTAATTCTCTAAATGTTAAGGGAGTAGCTCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATACATAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTATTGGAGTGCTGGGACCGAGAAAGGAAGGAGATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAAGCTGCCATGATAGAGATTGAGGTGCTGCAGCAGCTTGCTAAGCATGATAAAGGTGGCAATCGTTGTGTACAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCCAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTTCGCGAGATTGGCAGACAACTATTGGAATGTGTAGCATTCATGCATGATTTGCGCATGATCCATACTGACTTGAAGCCAGAAAACATACTTCTAGTTTCTCCGGACTATGTTAAAGTTCCTGACTATAGGAGTTCTTCCAGATCACCAAGTTCCTATTGCAAGAGAGTGCCAAAGTCAAGTGCTATCAAGGTTATTGATTTTGGTAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACACGACATTATAGGGCTCCTGAAGTTATACTTGGACTTGGGTGGAGTTATCCATGTGATATTTGGAGTGTGGGATGCATATTGATTGAGTTATGCACGGGTGAAGCTTTATTTCAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGAGTGCTTGGTCCGTTACCTCAGCACATGTTAAAGAGAGTAGACCGACATGCTGAGAAGTATGTTAGGAGGGGTAGATTGGATTGGCCTGAGGGTGCAACTTCTAGGGATAGTATCAAAGATGTATTGAAGCTTCCCCGGCTTCAGAACCTGGTAATGCAACACGTGGATCATTCAGCTGGAGATCTCATACATGTCTTGCAGGGCTTACTTAGATACGACCCTTCTGAAAGATTGACAGCTAGGGAGGCTCTAAGACATCCATTCTTTACGAGAGATCACCTTAGGAGATAA 1455 0.4371 MVTLSNYSIQSTPLDTTILQYKMLLLTRGRRGYLIPVFFASLLISLPPIVWLGIMEMERVFEFPHTHMDRRPRKRARLGWDIPEAPKAQVGLFCGQDVGNFPSYAPSRGPSEHTTNSLNVKGVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLRMIHTDLKPENILLVSPDYVKVPDYRSSSRSPSSYCKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILIELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGRLDWPEGATSRDSIKDVLKLPRLQNLVMQHVDHSAGDLIHVLQGLLRYDPSERLTAREALRHPFFTRDHLRR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0680 484 Gene3D Phosphorylase Kinase; domain 1 139 232 - -
Dere03g0680 484 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 55 480 - -
Dere03g0680 484 FunFam Serine/threonine-protein kinase AFC2 139 232 - -
Dere03g0680 484 CDD PKc_CLK 139 477 - -
Dere03g0680 484 SUPERFAMILY Protein kinase-like (PK-like) 139 481 IPR011009 -
Dere03g0680 484 MobiDBLite consensus disorder prediction 106 129 - -
Dere03g0680 484 Gene3D Transferase(Phosphotransferase) domain 1 206 477 - -
Dere03g0680 484 SMART serkin_6 152 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0680 484 ProSiteProfiles Protein kinase domain profile. 152 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0680 484 FunFam Serine/threonine-protein kinase AFC2 228 477 - -
Dere03g0680 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Dere03g0680 484 Pfam Protein kinase domain 152 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0680 484 MobiDBLite consensus disorder prediction 107 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0680 Dere-ChrDere03 10971264 10974994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0680 157 477 Core Cell Cycle Gene Families AT1G76540 25.904 2.07e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Dere03g0680 Pkinase 4.2e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0680 03 10971264 10974994 Dere03g0680 03 10971264 10974994 ECH