LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g0672	ATGTCTATCACGACTATACCTTCGTTTAGGACCCTAACAATGGCAGAATCACGCCTTCTGTCCTTGCCCTCCCTAATCTCCAACAAAGCCAAATACCCTTTTATCTCTATTCCTTCTAAACCACTTCAACTTCAGTTCTCATGCTCCAATTCCTCCGTCTTTTCACCATCTCTATATCTCACTAGGAAACCCCAACATTTGTCTATGCTCACATTTGTAGCCCAGACTTCAGGTTGGGCTCAACAAGAGGAAGACAACACGGTCACAATAGATGAAGAAGAACAAGGTGAACCCGCCTGGGAAAATCAAGACCCAGAAGCTCGTCTTTCGGATTGGGAGTCTGAGGGTGAAGGCGCAGCTATTGAGGGTAGCGAGGGCGAAGGAGAGAGTAATGATGAATTTTTGAAGGATGGGGAATTTCCAGAACCACCCGAAGATGCAAAACTATTTGTTGGGAATTTGCCTTATGATGTTGATAGTCAGAGATTGGCCATGCTTTTTGAGCAAGCCGGAACGGTGGAAATTGCTGAGGTCATTTATAATAGGAGCACTGACCAAAGTCGCGGGTTCGGATTTGTGACAATGAGTACAGTTGAAGAAGCTGAGAAAGCTGTCGAAAAGTTTAATCGCTACGATTTAGATGGAAGATTGTTGACTGTTAACAAGGCTGCTCCAAGAGGAACACAACCTGAACGTCCACCCCGTGTCTTTGAGCCTTCCTTCAGAGTCTATGTTGGCAACTTGCCCTGGGATGTTGATAATGGTCGCCTGGAGCAGATTTTCAGCGAACATGGTAAGGTTGTGAGTGCCCGGGTAGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTTGTCACAATGTCCAGCGAAACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGATGGAAGGGCAATTCGAGTGAATGTTGCTGAGGAAAGACCCAGGCGAGGCCCCTTTTGA	981	0.4638	MSITTIPSFRTLTMAESRLLSLPSLISNKAKYPFISIPSKPLQLQFSCSNSSVFSPSLYLTRKPQHLSMLTFVAQTSGWAQQEEDNTVTIDEEEQGEPAWENQDPEARLSDWESEGEGAAIEGSEGEGESNDEFLKDGEFPEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFNRYDLDGRLLTVNKAAPRGTQPERPPRVFEPSFRVYVGNLPWDVDNGRLEQIFSEHGKVVSARVVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGPF	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g0672	326	Gene3D	-	78	231	IPR012677	-
	Dere03g0672	326	SMART	rrm1_1	242	315	IPR000504	GO:0003723
	Dere03g0672	326	SMART	rrm1_1	148	221	IPR000504	GO:0003723
	Dere03g0672	326	FunFam	31 kDa ribonucleoprotein, chloroplastic	231	325	-	-
	Dere03g0672	326	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	241	319	IPR000504	GO:0003723
	Dere03g0672	326	FunFam	31 kDa ribonucleoprotein, chloroplastic	74	230	-	-
	Dere03g0672	326	MobiDBLite	consensus disorder prediction	86	100	-	-
	Dere03g0672	326	CDD	RRM1_PSRP2_like	148	227	-	-
	Dere03g0672	326	PANTHER	OS02G0815200 PROTEIN	29	321	-	-
	Dere03g0672	326	MobiDBLite	consensus disorder prediction	82	147	-	-
	Dere03g0672	326	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	243	313	IPR000504	GO:0003723
	Dere03g0672	326	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	149	218	IPR000504	GO:0003723
	Dere03g0672	326	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	147	225	IPR000504	GO:0003723
	Dere03g0672	326	MobiDBLite	consensus disorder prediction	129	144	-	-
	Dere03g0672	326	SUPERFAMILY	RNA-binding domain, RBD	143	234	IPR035979	GO:0003676
	Dere03g0672	326	SUPERFAMILY	RNA-binding domain, RBD	232	324	IPR035979	GO:0003676
	Dere03g0672	326	Gene3D	-	232	326	IPR012677	-
	Dere03g0672	326	CDD	RRM2_NsCP33_like	242	317	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g0672	Dere-ChrDere03	10878374	10880971	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g0672	145	323	Eukaryotic Initiation Factors Gene Family	AT3G16380	35.638	2.47e-23	98.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere03g0672	03	10878374	10880971	Dere14g0663	14	7075700	7077671	CCT
	Dere03g0672	03	10878374	10880971	Dere14g0663	14	7075700	7077671	ECH
	Dere03g0672	03	10878374	10880971	Dere03g0672	03	10878374	10880971	ECH