Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0664 ATGAATCCAAATCCGACGAATTTGCGGTTCGTCCTCTTCTCTGTATTTATACCCCCCTGCGTGCTTCACATTTCTCACACTACTCTTCTCTCTGTCTCTGAAGCACACAATCTCCTTTGTAACAACATGACAACCCTCCTCTTCCTCTGCTTTGTTCTCATCCCAACCCTCATTTCCTCTTCCCCTTTCCACGACCCTGAATTGATCGTCGAAGAGGTGAACAGGAAAATCAATGCCTCTGTTGCTAGGAGGAATTTGGGGTACCTCTCGTGCGTAACCGGCAATCCCATTGACGATTGCTGGAGGTGCGATCCGAATTGGGAGAAGAACCGGCAGAGGCTAGCTGATTGTGCGATTGGGTTCGGGAAGAACGCCATTGGTGGTAAAAACGGCAAGATTTACGTCGTGACGGACGCCGGAGACGACGATCCGGTGAACCCCCGGCCGGGGACTCTCCGGCACGCCGTGATTCAAGACGAACCGTTATGGATTATATTCGCGAGAGACATGGTGATTCGGTTGAAGGAAGAGCTCATTATGAATTCCTTCAAGACCATCGACGGGAGAGGCCCGAGCGTACACATTGCGGGTGGGCCCTGCATTACGATCCAGTACGTGACGAACATTATAATCCATGGGATTCACATACACGACTGCAAGCAGGGAGGGAATACTATGGTGAGGGACTCCCCACGACACTACGGGTGGAGAACCATATCGGACGGTGATGGCGTGTCCATCTTCGGGGGAAGCCACGTCTGGGTGGACCATTGCTCCTTGTCGAACTGCAATGATGGGTTGATCGATGCGATTCATGGGTCCACCGCGATCACCATTTCCAACAATTACATGACGCACCATGATAAGGTCATGTTATTGGGTCACAGCGATTCTTATACACAAGACAAGAACATGCAGGTCACCATAGCTTTCAACCACTTTGGTGAAGGCCTCGTTCAAAGAATGCCAAGATGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGTCGCCCCTGACAACAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCTCCTGAAAATGAATGGAAGAGCTGGAATTGGAGGTCAGAAGGGGATTTGTTGGTAAACGGTGCGTTTTTCAGGGCATCAGGTGCCGGAGCCTCTTCTAGCTATGCAAGGGCTTCTAGCTTAAGTGCAAGACCTTCTTCCCTTGTGGGTTCCATAACCGTGAGTGCGGGTACACTCAACTGTAAAAAAGGTTCTCGTTGCTGA 1332 0.5015 MNPNPTNLRFVLFSVFIPPCVLHISHTTLLSVSEAHNLLCNNMTTLLFLCFVLIPTLISSSPFHDPELIVEEVNRKINASVARRNLGYLSCVTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDAGDDDPVNPRPGTLRHAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGPSVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNTMVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAPENEWKSWNWRSEGDLLVNGAFFRASGAGASSSYARASSLSARPSSLVGSITVSAGTLNCKKGSRC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Dere03g0664 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Dere03g0664 443 SMART amb_all 169 366 IPR002022 -
Dere03g0664 443 SUPERFAMILY Pectin lyase-like 95 434 IPR011050 -
Dere03g0664 443 Gene3D - 94 436 IPR012334 -
Dere03g0664 443 PANTHER PECTATE LYASE 18-RELATED 63 441 IPR045032 GO:0030570
Dere03g0664 443 Pfam Pectate lyase 203 360 IPR002022 -
Dere03g0664 443 FunFam Pectate lyase 94 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0664 Dere-ChrDere03 10832960 10836629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0664 45 443 Polysaccharide Lyase AT5G63180 81.546 0.0 681